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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG002710
Reference: TK1151 Chr: ChrUn Coordinates: 864092-867123 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2958 bp · TkAUNG002710|TK1151|cDNA

GTCCAATAATATTTAGCAAACCGCATAGATCACTTACGTAATTATGTCTACTACGTATGCTCCATTAGTTGACAACGATTATTATTTCTTATAGGATTTTTTTTTATATAAACCACCATATATTTGCAGGTAGTGCAAAGTTTTCTCCCGCTAAATGCCCTCCAGACCTTGTATGCATGTTTATTATTATTTCTATTTTGAGACCAAATTCCCTTGATAACATTCCCAATCACCCTTCATGTTTCCTAATTTGCCTCAAG...

CDS

Download CDS FASTA

2313 bp · TkAUNG002710|TK1151|CDS

ATGTTACAACAAAAAGCAACAGGCAAAGGGCATTCGTGGTGGTGGGCTAGTCATATTCGAACTAAGCAGTCCAGATGGCTCGAACAAAATCTCCAAGATATGGACTTCAAGGTGGATCATGTTCTCAATTTGATTCAAAACGATGGCGATTCGTTCGCCAGAAGGGCGGAGATGTATTATAAACACCGGCCGGATGTTATAAACTTCGTCGAGGAAACTCTTCGTGCTTATCGATCGTTAGCGGAGAGGTATGATAAATT...

Protein

Download Protein FASTA

770 aa · TkAUNG002710|TK1151|PROTEIN

MLQQKATGKGHSWWWASHIRTKQSRWLEQNLQDMDFKVDHVLNLIQNDGDSFARRAEMYYKHRPDVINFVEETLRAYRSLAERYDKLSNALQKANTTIASVCPEKVDYNLDDDDDFNDVSSKSTKNSDSTKAPKLVRQKRTKIPKTPKPVNKDVNQVLNNASKTIQATKTNEEKENQNDSNDGLTKVDALEEIDNLQKQIEEIQAMKDSMKNYYENSLAEYWDAETQIIENRQRICSLEDEFEICKTIEEDEAGTSMAEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG002710
TK1151 IDTkAUNG002710
OH-1004 IDLXL04_014009
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)92.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG002710
LocationChrUn:864092-867123 (+)
DescriptionSimilar to NET2A: Protein NETWORKED 2A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g58215 Plant-specific actin binding protein. No verified direct reference in this release
At5g10500 Plant-specific actin binding protein. No verified direct reference in this release
At1g09720 Plant-specific actin binding protein. No verified direct reference in this release
At2g22560 Plant-specific actin binding protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014009 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0003779 actin binding Molecular Function
GO:0051015 actin filament binding Molecular Function
KEGG gene cross-reference
ath:AT1G58215
ath:AT2G22560
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.565
Rank 1 · TkAUNG002710 · TK1151
Nucleus0.264
Rank 2 · TkAUNG002710 · TK1151
Cell membrane0.145
Rank 3 · TkAUNG002710 · TK1151
Mitochondrion0.081
Rank 4 · TkAUNG002710 · TK1151
Golgi apparatus0.073
Rank 5 · TkAUNG002710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07765KIP112-85 aa
PF11887Mce4_CUP136-97 aa
PF10824T7SS_ESX_EspC61-96 aa
PF26039Dcst268-101 aa
PF27044HAUS3_CC72-105 aa
PF03938OmpH78-98 aa
PF25014NET2A153-218 aa
PF03938OmpH153-210 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG002710PF07765KIP112856.4e-34116.6
TkAUNG002710PF11887Mce4_CUP136970.1312.6
TkAUNG002710PF10824T7SS_ESX_EspC61960.7910.9
TkAUNG002710PF26039Dcst2681013.47.5
TkAUNG002710PF27044HAUS3_CC721050.003118.4
TkAUNG002710PF03938OmpH78980.003618.2
TkAUNG002710PF25014NET2A1532181.2e-32114.4
TkAUNG002710PF03938OmpH1532100.003618.2
TkAUNG002710PF04574DUF5921562140.02914.9
TkAUNG002710PF27241CLIP11582410.009116.8
TkAUNG002710PF10824T7SS_ESX_EspC1601960.7910.9
TkAUNG002710PF11887Mce4_CUP11882350.1312.6
TkAUNG002710PF01442Apolipoprotein1952050.005817.1
TkAUNG002710PF07765KIP11972136.4e-34116.6
TkAUNG002710PF25014NET2A2384281.2e-32114.4
TkAUNG002710PF07765KIP12442786.4e-34116.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0DMS1Arabidopsis thalianasp|P0DMS1|NET2A_ARATH Protein NETWORKED 2A30.100%Swiss-ProtMedium
Q8LPQ1Arabidopsis thalianasp|Q8LPQ1|NET2C_ARATH Protein NETWORKED 2C32.000%Swiss-ProtMedium
F4I131Arabidopsis thalianasp|F4I131|NET2B_ARATH Protein NETWORKED 2B33.200%Swiss-ProtMedium
F4IJK1Arabidopsis thalianasp|F4IJK1|NET2D_ARATH Protein NETWORKED 2D46.200%Swiss-ProtLow

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