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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G431930
Reference: TK1151 Chr: Chr08 Coordinates: 109811252-109813396 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2115 bp · TkA08G431930|TK1151|cDNA

ATGCTGAAAAGATCAAATCCTTCGCCAATCCATCTTCTACAAACCCTAAAATCTTTGAACAAAACCCAAATTTATTCATTTTGTACTTCAAACAGTAGTTCCGAGTCTGAAACTGATTGGGCGAGATTGCTAAAACCTTTCAACATTGAACAACTAAAGGACTCGCTCAATAGAATCACCCCTCTTCAGCTTCAGAAATTGCTTCACCTCCCACTTGACGTATCAACATCACTTGAGATATTTAATTCCGCTGGTACCCA...

CDS

Download CDS FASTA

2115 bp · TkA08G431930|TK1151|CDS

ATGCTGAAAAGATCAAATCCTTCGCCAATCCATCTTCTACAAACCCTAAAATCTTTGAACAAAACCCAAATTTATTCATTTTGTACTTCAAACAGTAGTTCCGAGTCTGAAACTGATTGGGCGAGATTGCTAAAACCTTTCAACATTGAACAACTAAAGGACTCGCTCAATAGAATCACCCCTCTTCAGCTTCAGAAATTGCTTCACCTCCCACTTGACGTATCAACATCACTTGAGATATTTAATTCCGCTGGTACCCA...

Protein

Download Protein FASTA

704 aa · TkA08G431930|TK1151|PROTEIN

MLKRSNPSPIHLLQTLKSLNKTQIYSFCTSNSSSESETDWARLLKPFNIEQLKDSLNRITPLQLQKLLHLPLDVSTSLEIFNSAGTQKGYAHTFDVYYALIDKIGAAGEFKTIDRLLIQMKDEGIVFQETLFVTIMRHYQRADLPGQATRLLLEMRAVFSCQPTSKSYNTVLDILVQGGCPKVAPNVFYEMLQRGIPPDVFSFAIVMKALCSINQVDSACTLLRDMTKHGCVPNSIVYQTLMHALSKDGRVDEALKLLEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G431930
TK1151 IDTkA08G431930
OH-1004 IDLXL04_034744
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)96.900
Protein coverage (%)TK1151 57.386 / OH-1004 57.500
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G431930
LocationChr08:109811252-109813396 (-)
DescriptionSimilar to At5g64320: Pentatricopeptide repeat-containing protein At5g64320, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g64320 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034744 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0032543 mitochondrial translation Biological Process
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G74580
ath:AT5G64320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.846
Rank 1 · TkA08G431930 · TK1151
Plastid0.089
Rank 2 · TkA08G431930 · TK1151
Nucleus0.051
Rank 3 · TkA08G431930 · TK1151
Cytoplasm0.035
Rank 4 · TkA08G431930 · TK1151
Cell membrane0.012
Rank 5 · TkA08G431930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long73-177 aa
PF13041PPR_297-125 aa
PF01535PPR97-125 aa
PF13812PPR_397-125 aa
PF23276TPR_2497-139 aa
PF29070MSC6_N99-222 aa
PF24760TPR_IF140_C111-156 aa
PF08579RPM2111-178 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G431930PF17177PPR_long731779.8e-39133.6
TkA08G431930PF13041PPR_2971255.2e-179581.1
TkA08G431930PF01535PPR971251.2e-115370.7
TkA08G431930PF13812PPR_3971251e-69231.2
TkA08G431930PF23276TPR_24971391.6e-41142.0
TkA08G431930PF29070MSC6_N992221.7e-37130.1
TkA08G431930PF24760TPR_IF140_C1111563.7e-0834.5
TkA08G431930PF08579RPM21111780.0001522.8
TkA08G431930PF29834SOV1_C1111410.2411.1
TkA08G431930PF13812PPR_31161751e-69231.2
TkA08G431930PF25058ARM_TT211291635.6e-0627.1
TkA08G431930PF01535PPR1321561.2e-115370.7
TkA08G431930PF13041PPR_21341735.2e-179581.1
TkA08G431930PF29978ATP18_TPR1481818.8e-1142.6
TkA08G431930PF12854PPR_11601739.4e-161521.9
TkA08G431930PF13041PPR_21632115.2e-179581.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FMF6Arabidopsis thalianasp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial65.200%Swiss-ProtLow

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