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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_034744
Reference: OH-1004 Chr: Chr07 Coordinates: 115441091-115443253 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2163 bp · LXL04_034744|LXL04_034744|OH1004|cDNA

ATGTCAATCCTTCAAGTCATGCTGAAAAGATCAAATCCTTCGCCAATCCATCTTCTACAAACCCTAAAATCTTTGAACAAAACCCAAATTTATTCATTTTGTACTTCAAACAGCAACTGTACTGGCGATTTCGTTAATGGAAGTAGTTCCGAGTCTGAAACTGATTGGGCGAGATTGCTAAAACCTTTCAACATTGAGCAACTAAAGGACTCGCTCAATAAAATCACCCCTCTTCAGCTTCAGAAATTGCTTCACCTCCC...

CDS

Download CDS FASTA

2163 bp · LXL04_034744|LXL04_034744|OH1004|CDS

ATGTCAATCCTTCAAGTCATGCTGAAAAGATCAAATCCTTCGCCAATCCATCTTCTACAAACCCTAAAATCTTTGAACAAAACCCAAATTTATTCATTTTGTACTTCAAACAGCAACTGTACTGGCGATTTCGTTAATGGAAGTAGTTCCGAGTCTGAAACTGATTGGGCGAGATTGCTAAAACCTTTCAACATTGAGCAACTAAAGGACTCGCTCAATAAAATCACCCCTCTTCAGCTTCAGAAATTGCTTCACCTCCC...

Protein

Download Protein FASTA

720 aa · LXL04_034744|LXL04_034744|OH1004|PROTEIN

MSILQVMLKRSNPSPIHLLQTLKSLNKTQIYSFCTSNSNCTGDFVNGSSSESETDWARLLKPFNIEQLKDSLNKITPLQLQKLLHLPLDVSTSLEIFNSAGTQKGYAHTFDVYYALIDKIGAAGEFKTIDRLLIQMKDEGIVFQETLFVTIMRHYQRADLPGQATRLLLEMRAVFSCQPTSKSYNTVLDILVQGGCPKVAPNVFYEMLQRGIPPDVFSFAIVMKALCSINQVDSACTLLRDMTKHGCVPNSIVYQTLMHA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_034744
TK1151 IDTkA08G431930
OH-1004 IDLXL04_034744
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)96.900
Protein coverage (%)TK1151 57.386 / OH-1004 57.500
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_034744
LocationChr07:115441091-115443253 (-)
DescriptionSimilar to At5g64320: Pentatricopeptide repeat-containing protein At5g64320, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g64320 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial. No verified direct reference in this release
At1g74580 Putative pentatricopeptide repeat-containing protein At1g74580. No verified direct reference in this release
At5g39710 Pentatricopeptide repeat-containing protein At5g39710. No verified direct reference in this release
At1g12300 Pentatricopeptide repeat-containing protein At1g12300, mitochondrial. No verified direct reference in this release
At1g12775 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034744 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0032543 mitochondrial translation Biological Process
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G74580
ath:AT5G64320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.844
Rank 1 · LXL04_034744 · OH-1004
Plastid0.092
Rank 2 · LXL04_034744 · OH-1004
Nucleus0.052
Rank 3 · LXL04_034744 · OH-1004
Cytoplasm0.035
Rank 4 · LXL04_034744 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_034744 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2179-227 aa
PF23276.3TPR_24187-308 aa
PF12854.14PPR_1210-243 aa
PF13041.13PPR_2221-263 aa
PF17177.11PPR_long230-320 aa
PF13812.13PPR_3238-293 aa
PF12854.14PPR_1246-277 aa
PF13041.13PPR_2249-297 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_034744PF13041.13PPR_21792274e-178578.2
LXL04_034744PF23276.3TPR_241873087.3e-42143.1
LXL04_034744PF12854.14PPR_12102432.5e-160520.5
LXL04_034744PF13041.13PPR_22212634e-178578.2
LXL04_034744PF17177.11PPR_long2303201.4e-38133.1
LXL04_034744PF13812.13PPR_32382931.2e-69231.0
LXL04_034744PF12854.14PPR_12462772.5e-160520.5
LXL04_034744PF13041.13PPR_22492974e-178578.2
LXL04_034744PF01535.27PPR2532827.1e-115368.3
LXL04_034744PF23276.3TPR_242533417.3e-42143.1
LXL04_034744PF29070.1MSC6_N2533461e-36127.6
LXL04_034744PF12854.14PPR_12803122.5e-160520.5
LXL04_034744PF13041.13PPR_22843334e-178578.2
LXL04_034744PF01535.27PPR2883177.1e-115368.3
LXL04_034744PF12854.14PPR_13153442.5e-160520.5
LXL04_034744PF17177.11PPR_long3444291.4e-38133.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FMF6Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g64320, mitochondrial56.222%Swiss-Protstrong database homology
Q9CA58Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g7458032.148%Swiss-Protmoderate database homology
Q9FIX3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g3971032.027%Swiss-Protmoderate database homology
Q0WKV3Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12300, mitochondrial34.757%Swiss-Protmoderate database homology
Q9LPX2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12775, mitochondrial32.037%Swiss-Protmoderate database homology

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