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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G393800
Reference: TK1151 Chr: Chr08 Coordinates: 100425992-100428458 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

612 bp · TkA08G393800|TK1151|cDNA

ATGTCAGGGTACAGAGCTGAGGATGACTACGATTACCTTTTCAAGGTGGTTTTGATCGGCGACTCAGGTGTCGGAAAATCCAACTTACTTTCGCGATTCACTAGGAATGAGTTTAGCCTCGAATCCAAGTCCACCATCGGTGTTGAGTTCGCTACACGAAGCTTGAATGTTGATAGCAAGGTCATCAAAGCTCAGATTTGGGATACTGTATACGACGTGACAAGATACCCGACGTTTGAAAACGTGGAGAGGTGGTTGAA...

CDS

Download CDS FASTA

612 bp · TkA08G393800|TK1151|CDS

ATGTCAGGGTACAGAGCTGAGGATGACTACGATTACCTTTTCAAGGTGGTTTTGATCGGCGACTCAGGTGTCGGAAAATCCAACTTACTTTCGCGATTCACTAGGAATGAGTTTAGCCTCGAATCCAAGTCCACCATCGGTGTTGAGTTCGCTACACGAAGCTTGAATGTTGATAGCAAGGTCATCAAAGCTCAGATTTGGGATACTGTATACGACGTGACAAGATACCCGACGTTTGAAAACGTGGAGAGGTGGTTGAA...

Protein

Download Protein FASTA

203 aa · TkA08G393800|TK1151|PROTEIN

MSGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDSKVIKAQIWDTVYDVTRYPTFENVERWLKELRDHTDPNIVVMLIGNKSDLRHLVAVQTDDAKFSEKESLYFMETSALDATNVENAFSEVLTQIYRIVSKKAMDAGQDASASASLPSKGQKIDVGKEVSAIKLLLLFFLVSVSLCT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G393800
TK1151 IDTkA08G393800
OH-1004 IDLXL04_020134
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)72.900
Protein coverage (%)TK1151 90.640 / OH-1004 77.778
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G393800
LocationChr08:100425992-100428458 (+)
DescriptionSimilar to RAB11D: Ras-related protein Rab11D
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g45750 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At4g18800 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0551400 Possesses GTPase activity. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020134 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0015031 protein transport Biological Process
GO:0042546 cell wall biogenesis Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0012505 endomembrane system Cellular Component
GO:0031901 early endosome membrane Cellular Component
GO:0032588 trans-Golgi network membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT4G18800
dosa:Os06g0551400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.358
Rank 1 · TkA08G393800 · TK1151
Golgi apparatus0.316
Rank 2 · TkA08G393800 · TK1151
Endoplasmic reticulum0.224
Rank 3 · TkA08G393800 · TK1151
Cell membrane0.181
Rank 4 · TkA08G393800 · TK1151
Lysosome / Vacuole0.165
Rank 5 · TkA08G393800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf14-68 aa
PF00071Ras15-69 aa
PF08477Roc15-69 aa
PF01926MMR_HSR115-71 aa
PF13479AAA_2415-59 aa
PF02421FeoB_N15-102 aa
PF03193RsgA_GTPase16-36 aa
PF13191AAA_1616-148 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G393800PF00025Arf14680.003317.7
TkA08G393800PF00071Ras15692.2e-41141.8
TkA08G393800PF08477Roc15697.5e-2072.1
TkA08G393800PF01926MMR_HSR115710.001619.3
TkA08G393800PF13479AAA_2415590.06613.6
TkA08G393800PF02421FeoB_N151020.07513.3
TkA08G393800PF03193RsgA_GTPase16360.005117.4
TkA08G393800PF13191AAA_16161480.01117.0
TkA08G393800PF13401AAA_2216460.02915.4
TkA08G393800PF00005ABC_tran16390.03915.3
TkA08G393800PF13173AAA_14161040.08213.6
TkA08G393800PF05621TniB16370.1412.3
TkA08G393800PF07728AAA_516340.2312.2
TkA08G393800PF00940RNA_pol561000.09412.2
TkA08G393800PF00071Ras701522.2e-41141.8
TkA08G393800PF08477Roc701077.5e-2072.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FK68Arabidopsis thalianasp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c76.400%Swiss-ProtHigh
Q9SN35Arabidopsis thalianasp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d75.900%Swiss-ProtHigh
P40393Oryza sativa subsp. japonicasp|P40393|RIC2_ORYSJ Ras-related protein RIC273.900%Swiss-ProtHigh

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