TkA08G388570 | RubberDandelionOmics

Gene overview

TkA08G388570

Reference: TK1151 Chr: Chr08 Coordinates: 99117094-99122601 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

903 bp · TkA08G388570|TK1151|cDNA

ATGAACACAACCAGATAGGACACAGTTCATAAAATGGAGGCAATAGGAGGTTTTAAAACCCTAGGTTTTATGACGACGGCATTTTACTTCCACTGTTCAGGAGCAGCTCCATTTCGTTGTTCCCCATACTTGTTGCGTCAAGTCAAAAAGAAATTCCACTCATCGCTTTCTCATTACTCCTATCGAACGTCTCCCCTTTGTTCACTTTCTGAAAATTTGGCTGGAGATTCATCGATTAATGGGATTGGTGTGGCGGGAAG...

CDS

Download CDS FASTA

948 bp · TkA08G388570|TK1151|CDS

ATGACGTTGCTTCTCAACTTCAGTCAATCAGCCGATTCTTCCTCTGTGATTTCATCTCGAGCCTGTACTCGATCACTTGACAGGAACAAACTATTTGTTCTTTGTGAGTTTGTACCCTACTCTGTCTACACTTCAGAATGCACAGTCACCGACGTTAGATGCGGCAACTTGCTCGATCTGATAGTGGATGGTGTTATTGCAGCGATGGTTGTAGCTGGACACGAGAATATTCCGATGGTTGTGGCCGAGACAGGTGATAC...

Protein

Download Protein FASTA

315 aa · TkA08G388570|TK1151|PROTEIN

MTLLLNFSQSADSSSVISSRACTRSLDRNKLFVLCEFVPYSVYTSECTVTDVRCGNLLDLIVDGVIAAMVVAGHENIPMVVAETGDTKIGSKGAPNGRRFVVLISILKQAENLAGDSSINGIGVAGSKVSEGKLLQVVLVSPQIPGNTGCIARSCAASGVGLHLVEPLGFEVDDTKLKRAGLDYWPYVVVKVHNSWADFRDYFKQQKGEKRLLAFTKRGTNIHSDFSYQRGDWLVFGSETSGLPAEALEDCEMGPLGGGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G388570`
TK1151 ID	TkA08G388570
OH-1004 ID	LXL04_034470
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	97.100
Protein coverage (%)	TK1151 65.397 / OH-1004 75.458 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G388570`
Location	Chr08:99117094-99122601 (-)
Description	Similar to slr0992: Putative tRNA (cytidine(34)-2'-O)-methyltransferase (Synechocystis sp. (strain PCC 6803 / Kazusa)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_034470` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0002130 wobble position ribose methylation Biological Process GO:0002131 wobble position cytosine ribose methylation Biological Process GO:0002132 wobble position uridine ribose methylation Biological Process GO:0005737 cytoplasm Cellular Component GO:0003723 RNA binding Molecular Function GO:0042802 identical protein binding Molecular Function GO:0141098 tRNA (cytidine(34)-2'-O)-methyltransferase activity Molecular Function GO:0141102 tRNA (5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase activity Molecular Function
KEGG gene cross-reference	bam:Bamb_2906 bch:Bcen2424_2851 bsu:BSU08930 sde:Sde_1130 syn:slr0992 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.532

Rank 1 · TkA08G388570 · TK1151

Cytoplasm0.226

Rank 2 · TkA08G388570 · TK1151

Nucleus0.212

Rank 3 · TkA08G388570 · TK1151

Mitochondrion0.082

Rank 4 · TkA08G388570 · TK1151

Cell membrane0.059

Rank 5 · TkA08G388570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00332Glyco_hydro_1738-94 aa

PF00588SpoU_methylase135-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G388570	`PF00332`	Glyco_hydro_17	38	94	1.6e-06	28.7
TkA08G388570	`PF00588`	SpoU_methylase	135	284	8.3e-32	111.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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