Gene Card
Gene overview
cDNA / CDS / Protein Sequences
822 bp · LXL04_034470|LXL04_034470|OH1004|cDNA
ATGGAGGCAATAGGAGGTTTTAAAACCCTAGGTTTTATGACGACGGCATTTTACTTCCACTGTTCAGGAGCAGCTCCATTTCATCGTTCCCCATACTTGTTGCGTCAAGTCAAAAATAAATTCCACTCATCGCTTTCTCATTACTCCTATCGAAAGTCTCCCCTTTGTTCACTTTCTGAAAATTTGGCTGGAGATTCATCGATTAATGGGATTGGTGTGGCGGGAAGCAAGGTGAGTGAGGGTAAACTTCTTCAAGTTGT...
822 bp · LXL04_034470|LXL04_034470|OH1004|CDS
ATGGAGGCAATAGGAGGTTTTAAAACCCTAGGTTTTATGACGACGGCATTTTACTTCCACTGTTCAGGAGCAGCTCCATTTCATCGTTCCCCATACTTGTTGCGTCAAGTCAAAAATAAATTCCACTCATCGCTTTCTCATTACTCCTATCGAAAGTCTCCCCTTTGTTCACTTTCTGAAAATTTGGCTGGAGATTCATCGATTAATGGGATTGGTGTGGCGGGAAGCAAGGTGAGTGAGGGTAAACTTCTTCAAGTTGT...
Protein
Download Protein FASTA273 aa · LXL04_034470|LXL04_034470|OH1004|PROTEIN
MEAIGGFKTLGFMTTAFYFHCSGAAPFHRSPYLLRQVKNKFHSSLSHYSYRKSPLCSLSENLAGDSSINGIGVAGSKVSEGKLLQVVLVSPQIPGNTGCIARSCAASGVGLHLVEPLGFEVDDTKLKRAGLDYWPYVVVKVHNSWADFRDYFKQQKGEKRLLAFTKRGTNIHSDFSYQRGDWLVFGSETSGLPPEALEDCEMGPLGGGLIKIPMIETYVRCLNLSVSVGIGLYEASRQLNYEQLQSHHQPCNDAQLPFTE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_034470 |
|---|---|
| TK1151 ID | TkA08G388570 |
| OH-1004 ID | LXL04_034470 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 97.100 |
| Protein coverage (%) | TK1151 65.397 / OH-1004 75.458Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_034470 |
|---|---|
| Location | Chr07:101939043-101943502 (+) |
| Description | Similar to slr0992: Putative tRNA (cytidine(34)-2'-O)-methyltransferase (Synechocystis sp. (strain PCC 6803 / Kazusa) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0002130 wobble position ribose methylation Biological Process GO:0002131 wobble position cytosine ribose methylation Biological Process GO:0002132 wobble position uridine ribose methylation Biological Process GO:0005737 cytoplasm Cellular Component GO:0003723 RNA binding Molecular Function GO:0042802 identical protein binding Molecular Function GO:0141098 tRNA (cytidine(34)-2'-O)-methyltransferase activity Molecular Function GO:0141102 tRNA (5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase activity Molecular Function |
| KEGG gene cross-reference | bam:Bamb_2906 bch:Bcen2424_2851 bsu:BSU08930 sde:Sde_1130 syn:slr0992 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00588.25SpoU_methylase84-233 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_034470 | PF00588.25 | SpoU_methylase | 84 | 233 | 5e-32 | 111.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.