RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G313590
Reference: TK1151 Chr: Chr08 Coordinates: 81070159-81075331 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2757 bp · TkA08G313590|TK1151|cDNA

ATGGAGTATTCGGGTTTGAGTAAGCGTAAATCATGGTTATATTGGTTGATGATGTTAACGATGATACATCTTCATATAGTTTGGCAAACACAAGGAGATTGTATAGAAGAGGAGAGAAATGCACTACTCGAAATCAAAGCTTCCCATATGAAATCATTTGATTCCAAAATTGACCATTTTCTCCCTACCTGGGTTGATTATGTCACTGGGGATGGTGGCGGTGACTGTTGTGATTGGGAGAGGGTCGGCTGCAACTCAAC...

CDS

Download CDS FASTA

2757 bp · TkA08G313590|TK1151|CDS

ATGGAGTATTCGGGTTTGAGTAAGCGTAAATCATGGTTATATTGGTTGATGATGTTAACGATGATACATCTTCATATAGTTTGGCAAACACAAGGAGATTGTATAGAAGAGGAGAGAAATGCACTACTCGAAATCAAAGCTTCCCATATGAAATCATTTGATTCCAAAATTGACCATTTTCTCCCTACCTGGGTTGATTATGTCACTGGGGATGGTGGCGGTGACTGTTGTGATTGGGAGAGGGTCGGCTGCAACTCAAC...

Protein

Download Protein FASTA

918 aa · TkA08G313590|TK1151|PROTEIN

MEYSGLSKRKSWLYWLMMLTMIHLHIVWQTQGDCIEEERNALLEIKASHMKSFDSKIDHFLPTWVDYVTGDGGGDCCDWERVGCNSTTGHVTELSLYRLRGILDDKVEFERKLWPLNVTLFLHFKELRSLNLSYNFLDKENMKTGLERLSSLKKLEVLDLSLNYIDNNVLQSLRTLTSLKILDLSQTSLNGNLPVNELSHLINLEELNLSESGINGTPDIQACTRISGLKKLESIDLSYNRFNKSIISCLSSLPSLKILH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G313590
TK1151 IDTkA08G313590
OH-1004 IDLXL04_032050
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)54.000
Protein coverage (%)TK1151 100.000 / OH-1004 79.657
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G313590
LocationChr08:81070159-81075331 (+)
DescriptionSimilar to RLP1: Receptor-like protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g74170 Receptor-like protein 13. No verified direct reference in this release
At2g25470 Receptor like protein 21. No verified direct reference in this release
At1g74180 Receptor-like protein 14. No verified direct reference in this release
UniProt: Q9SLI6 Putative receptor-like protein 8. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032050 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002218 activation of innate immune response Biological Process
GO:0002242 defense response to parasitic plant Biological Process
GO:0002752 cell surface pattern recognition receptor signaling pathway Biological Process
GO:0002768 immune response-regulating cell surface receptor signaling pathway Biological Process
GO:0007165 signal transduction Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045087 innate immune response Biological Process
GO:0051606 detection of stimulus Biological Process
GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G07390
ath:AT1G74170
ath:AT2G25470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.872
Rank 1 · TkA08G313590 · TK1151
Endoplasmic reticulum0.094
Rank 2 · TkA08G313590 · TK1151
Cytoplasm0.057
Rank 3 · TkA08G313590 · TK1151
Nucleus0.039
Rank 4 · TkA08G313590 · TK1151
Lysosome / Vacuole0.027
Rank 5 · TkA08G313590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_236-85 aa
PF13855LRR_8114-152 aa
PF23952LRR_EndoS121-186 aa
PF25013LRR_Zer-1122-190 aa
PF25019LRR_R13L1-DRL21125-210 aa
PF12799LRR_4126-166 aa
PF23211LRR_LRWD1126-210 aa
PF00560LRR_1127-138 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G313590PF08263LRRNT_236850.000123.2
TkA08G313590PF13855LRR_81141525.9e-36122.8
TkA08G313590PF23952LRR_EndoS1211865.08.1
TkA08G313590PF25013LRR_Zer-11221901.2e-0526.2
TkA08G313590PF25019LRR_R13L1-DRL211252100.04814.3
TkA08G313590PF12799LRR_41261664.3e-2897.4
TkA08G313590PF23211LRR_LRWD11262100.6410.4
TkA08G313590PF00560LRR_11271381.2e-41132.4
TkA08G313590PF23598LRR_141272803.5e-2589.2
TkA08G313590PF13516LRR_61271350.003418.0
TkA08G313590PF29247LRR_MHP1-HER1-GIP31281860.3310.8
TkA08G313590PF23952LRR_EndoS1442405.08.1
TkA08G313590PF13855LRR_81501895.9e-36122.8
TkA08G313590PF12799LRR_41531904.3e-2897.4
TkA08G313590PF13516LRR_61531670.003418.0
TkA08G313590PF00560LRR_11541751.2e-41132.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C6A6Arabidopsis thalianasp|Q9C6A6|RLP13_ARATH Receptor-like protein 1334.600%Swiss-ProtMedium
Q9SKK2Arabidopsis thalianasp|Q9SKK2|RLP21_ARATH Receptor like protein 2134.700%Swiss-ProtLow
F4HTV4Arabidopsis thalianasp|F4HTV4|RLP14_ARATH Receptor-like protein 1440.000%Swiss-ProtLow
Q9SLI6Arabidopsis thalianasp|Q9SLI6|RLP8X_ARATH Putative receptor-like protein 837.600%Swiss-ProtLow

JBrowse

View in Genome Browser