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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G266750
Reference: TK1151 Chr: Chr08 Coordinates: 69528177-69532686 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2383 bp · TkA08G266750|TK1151|cDNA

TGACTGATTCAGCCAAAATCTAGAAATGCAAAACTGCAAAAGATAGCGGGTAAGTCCCGAATTTGTGGTTTAAAACAACAACGAACGAGAGCAACCACCACCGCCGTGGGTATGGCGACGAACCTAAAACTCTTCTTATCCTCGAACCCACCACCGCAGGGCAACCACCAGTACTGTGCCAGAACCTCTATTCTCAGCCACAACCACCAGCACCTTCCGTTACCTGCTCCTAACAGAACATTTCATAGTCGACAGTCTTT...

CDS

Download CDS FASTA

2010 bp · TkA08G266750|TK1151|CDS

ATGGCGACGAACCTAAAACTCTTCTTATCCTCGAACCCACCACCGCAGGGCAACCACCAGTACTGTGCCAGAACCTCTATTCTCAGCCACAACCACCAGCACCTTCCGTTACCTGCTCCTAACAGAACATTTCATAGTCGACAGTCTTTTCCCTCTTCCAAGAATAATTTCAACAGCTACAGCAGAACTCACCGGAGGAAGTATCGTGTGTATAGTAAGGCCATAGACGTCCAGTCCAAAGATGTTTCTGACTCGGAAGC...

Protein

Download Protein FASTA

669 aa · TkA08G266750|TK1151|PROTEIN

MATNLKLFLSSNPPPQGNHQYCARTSILSHNHQHLPLPAPNRTFHSRQSFPSSKNNFNSYSRTHRRKYRVYSKAIDVQSKDVSDSEATFIAGRDRLLKVPTENIRNFSIIAHIDHGKSTLADKLLQVTGTVQSREMKEQFLDNMDLERERGITIKLQAARMRFTYEGKPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEVIPVLNKIDLPGAEPSRVVQEIEEIIGLDCSNAIYC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G266750
TK1151 IDTkA08G266750
OH-1004 IDLXL04_036270
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)26.100
Protein coverage (%)TK1151 69.357 / OH-1004 71.889
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G266750
LocationChr08:69528177-69532686 (+)
DescriptionSimilar to SVR3: Putative elongation factor TypA-like SVR3, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g08650 Promotes chloroplast protein synthesis. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0157700 Promotes chloroplast protein synthesis. No verified direct reference in this release
UniProt: B8AI54 Promotes chloroplast protein synthesis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036270 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000027 ribosomal large subunit assembly Biological Process
GO:0000302 response to reactive oxygen species Biological Process
GO:0006364 rRNA processing Biological Process
GO:0009409 response to cold Biological Process
GO:0010467 gene expression Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0032790 ribosome disassembly Biological Process
GO:0050821 protein stabilization Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G13650
bsu:BSU14770
sfl:SF3941
sfx:S3805
stm:STM4009
syn:slr1105
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.958
Rank 1 · TkA08G266750 · TK1151
Mitochondrion0.064
Rank 2 · TkA08G266750 · TK1151
Cytoplasm0.022
Rank 3 · TkA08G266750 · TK1151
Nucleus0.019
Rank 4 · TkA08G266750 · TK1151
Peroxisome0.014
Rank 5 · TkA08G266750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00009GTP_EFTU102-266 aa
PF01926MMR_HSR1115-231 aa
PF00071Ras147-243 aa
PF03144GTP_EFTU_D2278-344 aa
PF22042EF-G_D2278-329 aa
PF14492EFG_III361-434 aa
PF16658RF3_C364-436 aa
PF00679EFG_C468-553 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G266750PF00009GTP_EFTU1022661e-53182.5
TkA08G266750PF01926MMR_HSR11152310.0007720.3
TkA08G266750PF00071Ras1472430.006416.8
TkA08G266750PF03144GTP_EFTU_D22783443.1e-1247.5
TkA08G266750PF22042EF-G_D22783290.0116.7
TkA08G266750PF14492EFG_III3614340.001419.3
TkA08G266750PF16658RF3_C3644360.0116.4
TkA08G266750PF00679EFG_C4685533e-2279.2
TkA08G266750PF06421LepA_C5576634.3e-48162.6
TkA08G266750PF00009GTP_EFTU6406631e-53182.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FNM5Arabidopsis thalianasp|Q9FNM5|GUFP_ARATH Translation factor GUF1 homolog, chloroplastic82.900%Swiss-ProtHigh
B9F2U5Oryza sativa subsp. japonicasp|B9F2U5|GUFP_ORYSJ Translation factor GUF1 homolog, chloroplastic79.100%Swiss-ProtHigh
B8AI54Oryza sativa subsp. indicasp|B8AI54|GUFP_ORYSI Translation factor GUF1 homolog, chloroplastic82.500%Swiss-ProtHigh

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