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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G261980
Reference: TK1151 Chr: Chr08 Coordinates: 68337317-68340498 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2105 bp · TkA08G261980|TK1151|cDNA

AAAACAACCATACAATAAATCATTGTATTTTTTTTTTCCTTTGGTGGTAAAATAAATAAGTGAGGGGGAGGCGTTGGGGAAAGGCAGGGAAAGCTTCTGTAGTGTCTCCATCGACACAGGTAGAGGAAGAAGGAAGAAGAGGGGATCTTGCTTCATCTGCATCAGACAAACCCTAGGTTTCTACACTTCAAGCAGAGCAGATCCCCTTCAACATATACATACAACCACCCAATACCATGGCTCAAGAACCCTCTTCTTCT...

CDS

Download CDS FASTA

1587 bp · TkA08G261980|TK1151|CDS

ATGGCTCAAGAACCCTCTTCTTCTTCCCAAACCCTAGAATCTTCAATCAGCCATGAAGATATTCAGCAACCAGCTTCTTCTGTTACTTCAAGTTCTAGTGATACAAACAACCCAACTCTCACGCGTAACGTATCCTCCAGTCGCCTCAACGCTAAGGCTCCGGAATTTGTACCTCGAACTAGTACCGCCGCATCCTCGCCGTCTTCAGCCTCTACTACGACTGCCACTACTGTCACTAGTCGCCCCGATCTATCTCAGCC...

Protein

Download Protein FASTA

528 aa · TkA08G261980|TK1151|PROTEIN

MAQEPSSSSQTLESSISHEDIQQPASSVTSSSSDTNNPTLTRNVSSSRLNAKAPEFVPRTSTAASSPSSASTTTATTVTSRPDLSQPRLVISPPPTSPGIIHVYPSPNSPFHAPIPTHVPVSVPVQNHHAHHHHHHHVPLQYHHHQHHNHNHPRPFNGATGFLDHKDVPVQAQRTVHGDPDSKDGLTDEATQKIINQVEYYFSDINLATTDHLMRFINKDPEGYVPISVVVSFKKIKALVNSNAQLASILRNSTKLVVSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G261980
TK1151 IDTkA08G261980
OH-1004 IDLXL04_033416
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)84.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G261980
LocationChr08:68337317-68340498 (+)
DescriptionSimilar to LARP6B: La-related protein 6B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g43970 Transcriptional regulator. No verified direct reference in this release
At3g19090 Transcriptional regulator. No verified direct reference in this release
At5g46250 Transcriptional regulator. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033416 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000494 box C/D sno(s)RNA 3'-end processing Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009846 pollen germination Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0030154 cell differentiation Biological Process
GO:0032897 negative regulation of viral transcription Biological Process
GO:0036093 germ cell proliferation Biological Process
KEGG gene cross-reference
ath:AT2G43970
ath:AT3G19090
ath:AT5G46250
dre:334956
rno:686883
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.688
Rank 1 · TkA08G261980 · TK1151
Nucleus0.345
Rank 2 · TkA08G261980 · TK1151
Cell membrane0.069
Rank 3 · TkA08G261980 · TK1151
Endoplasmic reticulum0.046
Rank 4 · TkA08G261980 · TK1151
Mitochondrion0.039
Rank 5 · TkA08G261980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07145PAM244-59 aa
PF28339HENMT1_C187-265 aa
PF06025DUF913192-227 aa
PF05383La194-252 aa
PF30781DUF8734196-220 aa
PF10434MAM1226-312 aa
PF30781DUF8734231-269 aa
PF05383La287-293 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G261980PF07145PAM244590.0007319.8
TkA08G261980PF28339HENMT1_C1872650.01316.7
TkA08G261980PF06025DUF9131922270.4410.2
TkA08G261980PF05383La1942521.1e-1970.8
TkA08G261980PF30781DUF87341962200.3911.6
TkA08G261980PF10434MAM12263120.1212.7
TkA08G261980PF30781DUF87342312690.3911.6
TkA08G261980PF05383La2872931.1e-1970.8
TkA08G261980PF00076RRM_12873156.5e-0626.6
TkA08G261980PF00076RRM_13393626.5e-0626.6
TkA08G261980PF06025DUF9133564240.4410.2
TkA08G261980PF10434MAM13974250.1212.7
TkA08G261980PF28339HENMT1_C4004220.01316.7
TkA08G261980PF30781DUF87344024140.3911.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80567Arabidopsis thalianasp|O80567|LRP6B_ARATH La-related protein 6B49.800%Swiss-ProtMedium
Q9LHL3Arabidopsis thalianasp|Q9LHL3|LRP6C_ARATH La-related protein 6C51.000%Swiss-ProtLow
Q94A38Arabidopsis thalianasp|Q94A38|LRP6A_ARATH La-related protein 6A35.800%Swiss-ProtMedium

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