RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G257630
Reference: TK1151 Chr: Chr08 Coordinates: 67164083-67165750 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1620 bp · TkA08G257630|TK1151|cDNA

ATGGCGATTGTTGGGCCGAGTGGAAGCGGTAAGTCGAGTTTGCTTCATTTTATATCCGGTCGTGTTCGTGACAACACTTGGGATCCCAAAACCACCATTTCACTTAACGATTTCCCAATCACGAGCCCTTCACAAATGAAGAAGATATGCGGGTTTGTGGCACAAGAGGATAACTTGCTTCCTTTGCTAACCGTGAAAGAAACTTTAATGTATAGTGCTAAGTTTCGACTAACCGAAATGAGTTCAAAAGAGAAGGAACA...

CDS

Download CDS FASTA

1620 bp · TkA08G257630|TK1151|CDS

ATGGCGATTGTTGGGCCGAGTGGAAGCGGTAAGTCGAGTTTGCTTCATTTTATATCCGGTCGTGTTCGTGACAACACTTGGGATCCCAAAACCACCATTTCACTTAACGATTTCCCAATCACGAGCCCTTCACAAATGAAGAAGATATGCGGGTTTGTGGCACAAGAGGATAACTTGCTTCCTTTGCTAACCGTGAAAGAAACTTTAATGTATAGTGCTAAGTTTCGACTAACCGAAATGAGTTCAAAAGAGAAGGAACA...

Protein

Download Protein FASTA

539 aa · TkA08G257630|TK1151|PROTEIN

MAIVGPSGSGKSSLLHFISGRVRDNTWDPKTTISLNDFPITSPSQMKKICGFVAQEDNLLPLLTVKETLMYSAKFRLTEMSSKEKEHRVECLIHELGLVHVRNSYIGDEDDRGISGGERKRVSIGVDMIPDPPILLLDEPTSGLDSSSALQVVELLSNMSTSKQRTIILSIHQPSYRVLQYISNFLILSNGSVIHNGSLYSLEETINQLGFEIPTQLNALEFSMEMFRELIEPSFATVWAEQTNGTFQELLRRDQNTPNA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G257630
TK1151 IDTkA08G257630
OH-1004 IDLXL04_033453
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.900
Protein coverage (%)TK1151 100.000 / OH-1004 85.516
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G257630
LocationChr08:67164083-67165750 (+)
DescriptionSimilar to ABCG23: ABC transporter G family member 23
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19410 ABC transporter G family member 23. No verified direct reference in this release
At5g52860 ABC transporter G family member 8. No verified direct reference in this release
At4g25750 ABC transporter G family member 4. No verified direct reference in this release
At2g13610 ABC transporter G family member 5. No verified direct reference in this release
At1g53270 ABC transporter G family member 10. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033453 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0055085 transmembrane transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0042626 ATPase-coupled transmembrane transporter activity Molecular Function
GO:0140359 ABC-type transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G53270
ath:AT2G13610
ath:AT4G25750
ath:AT5G19410
ath:AT5G52860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.286
Rank 1 · TkA08G257630 · TK1151
Endoplasmic reticulum0.258
Rank 2 · TkA08G257630 · TK1151
Cell membrane0.234
Rank 3 · TkA08G257630 · TK1151
Golgi apparatus0.151
Rank 4 · TkA08G257630 · TK1151
Cytoplasm0.139
Rank 5 · TkA08G257630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005ABC_tran1-142 aa
PF13304AAA_211-18 aa
PF01926MMR_HSR11-41 aa
PF02463SMC_N2-17 aa
PF20703nSTAND12-16 aa
PF13555AAA_292-15 aa
PF03193RsgA_GTPase2-23 aa
PF02463SMC_N114-177 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G257630PF00005ABC_tran11421.5e-2281.4
TkA08G257630PF13304AAA_211186.4e-0627.1
TkA08G257630PF01926MMR_HSR11410.01915.8
TkA08G257630PF02463SMC_N2178.8e-0522.7
TkA08G257630PF20703nSTAND12160.03914.3
TkA08G257630PF13555AAA_292150.0514.1
TkA08G257630PF03193RsgA_GTPase2230.3411.4
TkA08G257630PF02463SMC_N1141778.8e-0522.7
TkA08G257630PF13304AAA_211301746.4e-0627.1
TkA08G257630PF07734FBA_11592410.07512.8
TkA08G257630PF03193RsgA_GTPase1641890.3411.4
TkA08G257630PF19055ABC2_membrane_71722370.0002620.7
TkA08G257630PF01061ABC2_membrane2644731.3e-49169.4
TkA08G257630PF19055ABC2_membrane_73273840.0002620.7
TkA08G257630PF01350Flavi_NS4A3464320.2512.0
TkA08G257630PF30622DUF86763584029.27.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3E9B8Arabidopsis thalianasp|Q3E9B8|AB23G_ARATH ABC transporter G family member 2367.000%Swiss-ProtHigh
Q9FLX5Arabidopsis thalianasp|Q9FLX5|AB8G_ARATH ABC transporter G family member 847.200%Swiss-ProtMedium
Q9SW08Arabidopsis thalianasp|Q9SW08|AB4G_ARATH ABC transporter G family member 445.700%Swiss-ProtMedium
Q9SIT6Arabidopsis thalianasp|Q9SIT6|AB5G_ARATH ABC transporter G family member 543.500%Swiss-ProtMedium
Q9MAH4Arabidopsis thalianasp|Q9MAH4|AB10G_ARATH ABC transporter G family member 1044.300%Swiss-ProtMedium

JBrowse

View in Genome Browser