TkA08G250360 | RubberDandelionOmics

Gene overview

TkA08G250360

Reference: TK1151 Chr: Chr08 Coordinates: 65392529-65396763 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1999 bp · TkA08G250360|TK1151|cDNA

ATGGCACGAATCACCAACAAAATGAGTAGAGATTTCGGTATCAATGGATATAATGTTTGTACTTGCTGTCTGTTGAAGAAAATCGCCCCTATGGCGGACCAGAAACAGCAAGAATCCATCAATCCATGGGGTTTAAAATCATGGACATACCTCTCATCTCTCCGGCAACATTCGCCGTTAATACAATGCATCACCAACTTCGTATCAATGGATATAATGGCCAATACCCTCTTAGCCGCCGGTGCATCACCGGCGATGGT...

CDS

Download CDS FASTA

930 bp · TkA08G250360|TK1151|CDS

ATGGCACGAATCACCAACAAAATGAGTAGAGATTTCGGTATCAATGGATATAATGTTTGTACTTGCTGTCTGTTGAAGAAAATCGCCCCTATGGCGGACCAGAAACAGCAAGAATCCATCAATCCATGGGGTTTAAAATCATGGACATACCTCTCATCTCTCCGGCAACATTCGCCGTTAATACAATGCATCACCAACTTCGTATCAATGGATATAATGGCCAATACCCTCTTAGCCGCCGGTGCATCACCGGCGATGGT...

Protein

Download Protein FASTA

309 aa · TkA08G250360|TK1151|PROTEIN

MARITNKMSRDFGINGYNVCTCCLLKKIAPMADQKQQESINPWGLKSWTYLSSLRQHSPLIQCITNFVSMDIMANTLLAAGASPAMVHSILEISDFTPHTQSVLINVGTLTPDWLPAMKAAAGVANQLGKPWVLDPAAVGASSFRLKACLELIELKPTVIRGNGSEIIALSMASIGSTKGADSLHESKDAVESAKSLAKSSGSIVAISGSVDFVTDGERVVGAHNGVPMMQKITASGCAVTALIAAFVAVDPTHAFEATA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G250360`
TK1151 ID	TkA08G250360
OH-1004 ID	LXL04_033315
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G250360

Location Chr08:65392529-65396763 (+)

Description Similar to THIM: Hydroxyethylthiazole kinase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g24030`	Thiazole kinase involved in thiamine salvage pathway.	Identification of the thiamin salvage enzyme thiazole kinase in Arabidopsis and maize.2013 · DOI: 10.1016/j.phytochem.2013.05.017

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033315 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009228 thiamine biosynthetic process Biological Process

GO:0009229 thiamine diphosphate biosynthetic process Biological Process

GO:0036172 thiamine salvage Biological Process

GO:0000287 magnesium ion binding Molecular Function

GO:0004417 hydroxyethylthiazole kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G24030

rsh:Rsph17029_2302

rsk:RSKD131_2006

rsp:RSP_0649

zma:103635163

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.568

Rank 1 · TkA08G250360 · TK1151

Nucleus0.228

Rank 2 · TkA08G250360 · TK1151

Mitochondrion0.203

Rank 3 · TkA08G250360 · TK1151

Peroxisome0.098

Rank 4 · TkA08G250360 · TK1151

Plastid0.096

Rank 5 · TkA08G250360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02110HK51-296 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G250360	`PF02110`	HK	51	296	6.7e-72	242.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LIQ4`	Arabidopsis thaliana	sp\|Q9LIQ4\|THIM_ARATH Hydroxyethylthiazole kinase	63.500%	Swiss-Prot	High

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