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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G243010
Reference: TK1151 Chr: Chr08 Coordinates: 63454458-63465054 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3716 bp · TkA08G243010|TK1151|cDNA

AAAATATCCAAAAAGAAGTGTCACAATTGTTGACAGAAACGTAATGCCATGGATAAAGCCTACATCTTTTCGAGAAGCTGTAGCTACGTGTCACGTTCCGAGTGAATAGCTTCCATGTATGATCAAGTCCGATGGTTCTATCGGCTTTAATCACGGTGGCTTCCAAGGAAATTCTCGATTTTGTTGCAATTGCATTCGACAAATACCGTGATTCTCTCTCTCTCTCTCCCTTCTTAAGCAAAAAAATCCGGGAAATCGAG...

CDS

Download CDS FASTA

2235 bp · TkA08G243010|TK1151|CDS

ATGGAGTCTGGTGATCTTACTAGGGCACTCCAGTATTACAAGGAAGCTGTGAAGCTCAAACCAACATTTCATGATGCCTATTTGAATTTGGGGAATGTTTACAAGGCTCTGGGGATGTCTAATGAATCTATAATCTGTTATCAGCGAGCTCTTCAGTCAAAACCAGATTATGCTATGGCTTTTGGGAACCTAGCTAGCATGTATTATGAGCAAGGAAACTTGGAGAATGCAATTAAGCATTATAGACAAGCAATTGTTTG...

Protein

Download Protein FASTA

744 aa · TkA08G243010|TK1151|PROTEIN

MESGDLTRALQYYKEAVKLKPTFHDAYLNLGNVYKALGMSNESIICYQRALQSKPDYAMAFGNLASMYYEQGNLENAIKHYRQAIVCDARFLEAYNNLGNALKDAGKVEEAIHCYRQCLSLQPSHPQAFTNLGNIYMEWNMMTAAAQCYKATLSVTTGLSAPFNNLAIIYKQQGNYADAISCYNEVVRIDPLAADGLVNRGNTFKEIGRVNDAIQDYSSAIVIRPNMAEAHANLASAYKDSGHVEAAIKSYRQALVVRPD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G243010
TK1151 IDTkA08G243010
OH-1004 IDLXL04_014508
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)88.400
Protein coverage (%)TK1151 49.866 / OH-1004 99.731
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G243010
LocationChr08:63454458-63465054 (-)
DescriptionNo functional description available
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g04240 O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014508 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000423 mitophagy Biological Process
GO:0000432 positive regulation of transcription from RNA polymerase II promoter by glucose Biological Process
GO:0001933 negative regulation of protein phosphorylation Biological Process
GO:0001934 positive regulation of protein phosphorylation Biological Process
GO:0002181 cytoplasmic translation Biological Process
GO:0006041 glucosamine metabolic process Biological Process
GO:0006110 regulation of glycolytic process Biological Process
GO:0006111 regulation of gluconeogenesis Biological Process
GO:0006325 chromatin organization Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006493 protein O-linked glycosylation Biological Process
KEGG gene cross-reference
ath:AT3G04240
mmu:108155
ocu:100354727
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.508
Rank 1 · TkA08G243010 · TK1151
Cell membrane0.261
Rank 2 · TkA08G243010 · TK1151
Nucleus0.225
Rank 3 · TkA08G243010 · TK1151
Golgi apparatus0.104
Rank 4 · TkA08G243010 · TK1151
Mitochondrion0.080
Rank 5 · TkA08G243010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07719TPR_21-22 aa
PF14559TPR_191-56 aa
PF29386CFAP70_mid_TPR1-72 aa
PF23914TPR_CcmH_CycH1-83 aa
PF31146MIT_ATG381-28 aa
PF10952DUF27531-19 aa
PF13414TPR_112-38 aa
PF13181TPR_82-22 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G243010PF07719TPR_21229.9e-46150.8
TkA08G243010PF14559TPR_191563.5e-2279.2
TkA08G243010PF29386CFAP70_mid_TPR1721.7e-1867.9
TkA08G243010PF23914TPR_CcmH_CycH1832.4e-0834.7
TkA08G243010PF31146MIT_ATG381280.000222.2
TkA08G243010PF10952DUF27531190.8810.4
TkA08G243010PF13414TPR_112381.1e-56188.9
TkA08G243010PF13181TPR_82228.7e-45147.8
TkA08G243010PF13176TPR_72201.6e-30103.3
TkA08G243010PF13432TPR_162342.4e-30105.3
TkA08G243010PF13428TPR_142322.1e-2587.3
TkA08G243010PF29407CFAP70_TPR_C2783.9e-1866.6
TkA08G243010PF13371TPR_92562.3e-1660.3
TkA08G243010PF24575TPR_Slam2328.2e-1349.4
TkA08G243010PF17874TPR_MalT2194.5e-1143.3
TkA08G243010PF31234TPR_Psidin_N2908.5e-0522.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M8Y0Arabidopsis thalianasp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC81.500%Swiss-ProtMedium

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