LXL04_014508 | RubberDandelionOmics

Gene overview

LXL04_014508

Reference: OH-1004 Chr: Chr03 Coordinates: 51255129-51257108 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1149 bp · LXL04_014508|LXL04_014508|OH1004|cDNA

TATGTGAGCAGTGATTTTGGAAACCATCCACTGTCACATTTGATGGGATCAGTATTTGGCATGCACAACAGAGAAAATGTTGAGGTGTTCTGCTATGCATTGAGTCCAAATGATGGGAGTGAATGGAGGGTTCGTATCCAGTCAGAAGCTGAACACTTTAAGGACGTGTCAGCCATGACTTCTGACATGATTGCAAGGCTTATAAATGAGGACCACATTCAGATACTTATCAACCTCAATGGTTATACCAAGGGGGCAAG...

CDS

Download CDS FASTA

1119 bp · LXL04_014508|LXL04_014508|OH1004|CDS

CTGTCACATTTGATGGGATCAGTATTTGGCATGCACAACAGAGAAAATGTTGAGGTGTTCTGCTATGCATTGAGTCCAAATGATGGGAGTGAATGGAGGGTTCGTATCCAGTCAGAAGCTGAACACTTTAAGGACGTGTCAGCCATGACTTCTGACATGATTGCAAGGCTTATAAATGAGGACCACATTCAGATACTTATCAACCTCAATGGTTATACCAAGGGGGCAAGAAATGAAATATTTGCTCTGCAGCCAGCTCC...

Protein

Download Protein FASTA

372 aa · LXL04_014508|LXL04_014508|OH1004|PROTEIN

MSHLMGSVFGMHNRENVEVFCYALSPNDGSEWRVRIQSEAEHFKDVSAMTSDMIARLINEDHIQILINLNGYTKGARNEIFALQPAPIQVSYMGFPGTTGANYIQYLVTDEFVSPTRFAHIYSEKLVHLPHCYFVNDYKQKNVDVLDPSCQPKRSAYGLPENKFIFACFNQLYKMDPEIFITWCNILKRVPNSALWLLRFPAAGEMRLRAYAAAQGVQPDQIIFTDVAMKNEHIRRSSLADLCLDTPLCNAHTTGTDVLW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014508`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014508

Location Chr03:51255129-51257108 (-)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g04240`	O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_014508 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0000423 mitophagy Biological Process

GO:0000432 positive regulation of transcription from RNA polymerase II promoter by glucose Biological Process

GO:0001933 negative regulation of protein phosphorylation Biological Process

GO:0001934 positive regulation of protein phosphorylation Biological Process

GO:0002181 cytoplasmic translation Biological Process

GO:0006041 glucosamine metabolic process Biological Process

GO:0006110 regulation of glycolytic process Biological Process

GO:0006111 regulation of gluconeogenesis Biological Process

GO:0006325 chromatin organization Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006493 protein O-linked glycosylation Biological Process

KEGG gene cross-reference

ath:AT3G04240

mmu:108155

ocu:100354727

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.436

Rank 1 · LXL04_014508 · OH-1004

Cell membrane0.368

Rank 2 · LXL04_014508 · OH-1004

Nucleus0.215

Rank 3 · LXL04_014508 · OH-1004

Mitochondrion0.105

Rank 4 · LXL04_014508 · OH-1004

Endoplasmic reticulum0.081

Rank 5 · LXL04_014508 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13844.13Glyco_transf_412-140 aa

PF13844.13Glyco_transf_41153-339 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014508	`PF13844.13`	Glyco_transf_41	2	140	7.6e-130	434.4
LXL04_014508	`PF13844.13`	Glyco_transf_41	153	339	7.6e-130	434.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M8Y0`	Arabidopsis thaliana	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC	84.140%	Swiss-Prot	strong database homology

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