TkA08G235570 | RubberDandelionOmics

Gene overview

TkA08G235570

Reference: TK1151 Chr: Chr08 Coordinates: 61383610-61389283 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1266 bp · TkA08G235570|TK1151|cDNA

ATGACAGGGAGTAATAAAAGGAAGTTTGTAAGTTGTGTTGAGGAAGATAGAATCAGTAACTTACCAGAACACTTGATATCCACAATCCTAGAACTACTTCGACTTCAAGATGCCGTAAAAACAAGCATTCTATCAAAAAAGTGGAGGTACATATGGACCAAAATGAGGATGTTCATTTTTGATAACTATTTCTTCAACAAATTTGCTAAAAACGGAGCTTTTGGTCGTAATGGGTTCATAAGAATCATAAACAAAGTGTT...

CDS

Download CDS FASTA

1266 bp · TkA08G235570|TK1151|CDS

ATGACAGGGAGTAATAAAAGGAAGTTTGTAAGTTGTGTTGAGGAAGATAGAATCAGTAACTTACCAGAACACTTGATATCCACAATCCTAGAACTACTTCGACTTCAAGATGCCGTAAAAACAAGCATTCTATCAAAAAAGTGGAGGTACATATGGACCAAAATGAGGATGTTCATTTTTGATAACTATTTCTTCAACAAATTTGCTAAAAACGGAGCTTTTGGTCGTAATGGGTTCATAAGAATCATAAACAAAGTGTT...

Protein

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421 aa · TkA08G235570|TK1151|PROTEIN

MTGSNKRKFVSCVEEDRISNLPEHLISTILELLRLQDAVKTSILSKKWRYIWTKMRMFIFDNYFFNKFAKNGAFGRNGFIRIINKVLNLHTGPILKFIIHIPNINMFHDSFEEVDQWMLLLSRNGVSELIFTNSSQRNKLPSYLFSCLELTKLVLEKCVFKPPIEFEGFINLTDLYLKNIGFMCGTQIILPQLGILWLDTCTNVCNFNIKATKLHNLFVSNCPDVKLLHLLHSPCITVLGTYFPNPIRDERITLEVMLSN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G235570`
TK1151 ID	TkA08G235570
OH-1004 ID	LXL04_033151
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	75.900
Protein coverage (%)	TK1151 86.936 / OH-1004 99.167 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G235570

Location Chr08:61383610-61389283 (-)

Description Similar to At1g13570: F-box/FBD/LRR-repeat protein At1g13570

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13570`	F-box/FBD/LRR-repeat protein At1g13570.	No verified direct reference in this release
`At2g04230`	F-box/FBD/LRR-repeat protein At2g04230.	No verified direct reference in this release
`At5g38590`	FBD-associated F-box protein At5g38590.	No verified direct reference in this release
`At5g56370`	FBD-associated F-box protein At5g56370.	No verified direct reference in this release
`At5g56420`	F-box/FBD/LRR-repeat protein At5g56420.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033151 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT1G13570

ath:AT2G04230

ath:AT3G26922

ath:AT5G38590

ath:AT5G56420

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.747

Rank 1 · TkA08G235570 · TK1151

Cytoplasm0.324

Rank 2 · TkA08G235570 · TK1151

Endoplasmic reticulum0.039

Rank 3 · TkA08G235570 · TK1151

Cell membrane0.033

Rank 4 · TkA08G235570 · TK1151

Plastid0.020

Rank 5 · TkA08G235570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box18-57 aa

PF12937F-box-like18-51 aa

PF23622LRR_At1g61320_AtMIF187-228 aa

PF24758LRR_At5g56370114-327 aa

PF23622LRR_At1g61320_AtMIF1189-330 aa

PF08387FBD291-320 aa

PF12937F-box-like339-351 aa

PF08387FBD349-388 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G235570	`PF00646`	F-box	18	57	1.5e-07	31.8
TkA08G235570	`PF12937`	F-box-like	18	51	0.023	15.2
TkA08G235570	`PF23622`	LRR_At1g61320_AtMIF1	87	228	9.4e-05	22.7
TkA08G235570	`PF24758`	LRR_At5g56370	114	327	5.9e-12	46.4
TkA08G235570	`PF23622`	LRR_At1g61320_AtMIF1	189	330	9.4e-05	22.7
TkA08G235570	`PF08387`	FBD	291	320	1.7e-06	28.5
TkA08G235570	`PF12937`	F-box-like	339	351	0.023	15.2
TkA08G235570	`PF08387`	FBD	349	388	1.7e-06	28.5
TkA08G235570	`PF24758`	LRR_At5g56370	373	390	5.9e-12	46.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ70`	Arabidopsis thaliana	sp\|Q9FZ70\|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570	31.900%	Swiss-Prot	Medium
`Q6NKX3`	Arabidopsis thaliana	sp\|Q6NKX3\|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230	28.500%	Swiss-Prot	Low
`Q9FFW2`	Arabidopsis thaliana	sp\|Q9FFW2\|FBD17_ARATH FBD-associated F-box protein At5g38590	27.200%	Swiss-Prot	Low
`Q9FM94`	Arabidopsis thaliana	sp\|Q9FM94\|FBD21_ARATH FBD-associated F-box protein At5g56370	23.700%	Swiss-Prot	Low
`Q9FM89`	Arabidopsis thaliana	sp\|Q9FM89\|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420	22.200%	Swiss-Prot	Low

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