TkA08G230590 | RubberDandelionOmics

Gene overview

TkA08G230590

Reference: TK1151 Chr: Chr08 Coordinates: 60085146-60085985 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

751 bp · TkA08G230590|TK1151|cDNA

AATTATATAAAAAGCAGAGAAAGAGCAACACAATCTTTAAGACGTACCCCAATCGATTTGAAAAGAGAGAAAGAGGAGACGGAGCTCAAGGTTCCTGAAACTTTAACCTTGTGTACACTGCCGGTGGCTAATCATCCGGCTAAGATCTCCGGTTCCTATGAGCATAGATCGGATCCGAAGATTGGTGGTTCCGGCGATGTCATCGTTGACGTTAGACTGACATTCGCTACTACACAGGAACCACGATCCACGGCGGTTGA...

CDS

Download CDS FASTA

474 bp · TkA08G230590|TK1151|CDS

AATTATATAAAAAGCAGAGAAAGAGCAACACAATCTTTAAGACGTACCCCAATCGATTTGAAAAGAGAGAAAGAGGAGACGGAGCTCAAGGTTCCTGAAACTTTAACCTTGTGTACACTGCCGGTGGCTAATCATCCGGCTAAGATCTCCGGTTCCTATGAGCATAGATCGGATCCGAAGATTGGTGGTTCCGGCGATGTCATCGTTGACGTTAGACTGACATTCGCTACTACACAGGAACCACGATCCACGGCGGTTGA...

Protein

Download Protein FASTA

157 aa · TkA08G230590|TK1151|PROTEIN

NYIKSRERATQSLRRTPIDLKREKEETELKVPETLTLCTLPVANHPAKISGSYEHRSDPKIGGSGDVIVDVRLTFATTQEPRSTAVDDRMKRSGVNRCSGCRKKVGLMGFRCRCGEMFCSEHRYSDRHDCSYDYKAAGRDAIARENPMVRAAKILKV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G230590`
TK1151 ID	TkA08G230590
OH-1004 ID	LXL04_033103
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 87.261 / OH-1004 59.825 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G230590

Location Chr08:60085146-60085985 (-)

Description Similar to SAP5: Zinc finger A20 and AN1 domain-containing stress-associated protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12630`	May be involved in environmental stress response.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2Z2J6`	May be involved in environmental stress response.	No verified direct reference in this release
`Os09g0486500`	May be involved in environmental stress response.	No verified direct reference in this release
`Os08g0504700`	May be involved in environmental stress response.	No verified direct reference in this release
`Os05g0299700`	May be involved in environmental stress response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033103 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0051865 protein autoubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0004842 ubiquitin-protein transferase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G12630

dosa:Os05g0299700

dosa:Os08g0504700

dosa:Os09g0486500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.694

Rank 1 · TkA08G230590 · TK1151

Cytoplasm0.317

Rank 2 · TkA08G230590 · TK1151

Mitochondrion0.062

Rank 3 · TkA08G230590 · TK1151

Cell membrane0.030

Rank 4 · TkA08G230590 · TK1151

Endoplasmic reticulum0.020

Rank 5 · TkA08G230590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01428zf-AN198-135 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G230590	`PF01428`	zf-AN1	98	135	3.6e-11	43.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LHJ8`	Arabidopsis thaliana	sp\|Q9LHJ8\|SAP5_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 5	51.000%	Swiss-Prot	High
`A2Z2J6`	Oryza sativa subsp. indica	sp\|A2Z2J6\|SAP1_ORYSI Zinc finger A20 and AN1 domain-containing stress-associated protein 1	71.600%	Swiss-Prot	Low
`A3C039`	Oryza sativa subsp. japonica	sp\|A3C039\|SAP1_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 1	71.600%	Swiss-Prot	Low
`Q84PD8`	Oryza sativa subsp. japonica	sp\|Q84PD8\|SAP11_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 11	75.000%	Swiss-Prot	Low
`Q0DJC7`	Oryza sativa subsp. japonica	sp\|Q0DJC7\|SAP15_ORYSJ Zinc finger AN1 domain-containing stress-associated protein 15	68.300%	Swiss-Prot	Low

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