LXL04_033103 | RubberDandelionOmics

Gene overview

LXL04_033103

Reference: OH-1004 Chr: Chr07 Coordinates: 35959233-35961147 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

690 bp · LXL04_033103|LXL04_033103|OH1004|cDNA

ATGTATCTTCAGGATGAAGCAGTTGGCTTTGCTTATGTGAGTCAACGTGAAGCTCTCCCCTATTTgaatcttttcaaaaccaaatTGATACTATCAAGGTACGAGACCCCATGTTTTGCTTTCAAGAAATTATATAAAAAGCAGAGAAAGAGCAACACAATCTTTAAGACGTACCCCAATCGATTTGGTAGGTCCAATTCCATTACTCATTTTACTCTCTCCTCTTCAAACCCCCAAACCATTGGTGCCATCTCGTCGCG...

CDS

Download CDS FASTA

690 bp · LXL04_033103|LXL04_033103|OH1004|CDS

ATGTATCTTCAGGATGAAGCAGTTGGCTTTGCTTATGTGAGTCAACGTGAAGCTCTCCCCTATTTGAATCTTTTCAAAACCAAATTGATACTATCAAGGTACGAGACCCCATGTTTTGCTTTCAAGAAATTATATAAAAAGCAGAGAAAGAGCAACACAATCTTTAAGACGTACCCCAATCGATTTGGTAGGTCCAATTCCATTACTCATTTTACTCTCTCCTCTTCAAACCCCCAAACCATTGGTGCCATCTCGTCGCG...

Protein

Download Protein FASTA

229 aa · LXL04_033103|LXL04_033103|OH1004|PROTEIN

MYLQDEAVGFAYVSQREALPYLNLFKTKLILSRYETPCFAFKKLYKKQRKSNTIFKTYPNRFGRSNSITHFTLSSSNPQTIGAISSRKLMAQKREKEETELKVPETLTLCTLPVANHPAKISGSYEHRSDPKIGGSGDVIVDVRLTFATTQEPRSTAVDDRMKRSGVNRCSGCRKKVGLMGFRCRCGEMFCSEHRYSDRHDCSYDYKAAGRDAIARENPMVRAAKILKV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033103`
TK1151 ID	TkA08G230590
OH-1004 ID	LXL04_033103
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 87.261 / OH-1004 59.825 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033103

Location Chr07:35959233-35961147 (-)

Description Similar to SAP5: Zinc finger A20 and AN1 domain-containing stress-associated protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12630`	May be involved in environmental stress response.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0486500`	May be involved in environmental stress response.	No verified direct reference in this release
`UniProt: A2Z2J6`	May be involved in environmental stress response.	No verified direct reference in this release
`Os08g0504700`	May be involved in environmental stress response.	No verified direct reference in this release
`Os05g0299700`	May be involved in environmental stress response.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_033103 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0051865 protein autoubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0004842 ubiquitin-protein transferase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G12630

dosa:Os05g0299700

dosa:Os08g0504700

dosa:Os09g0486500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.704

Rank 1 · LXL04_033103 · OH-1004

Cytoplasm0.284

Rank 2 · LXL04_033103 · OH-1004

Mitochondrion0.056

Rank 3 · LXL04_033103 · OH-1004

Cell membrane0.038

Rank 4 · LXL04_033103 · OH-1004

Endoplasmic reticulum0.028

Rank 5 · LXL04_033103 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01428.24zf-AN1170-207 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033103	`PF01428.24`	zf-AN1	170	207	6.5e-11	42.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LHJ8`	Arabidopsis thaliana	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	48.214%	Swiss-Prot	moderate database homology
`A3C039`	Oryza sativa subsp. japonica	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	71.622%	Swiss-Prot	weak database homology
`A2Z2J6`	Oryza sativa subsp. indica	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	71.622%	Swiss-Prot	weak database homology
`Q84PD8`	Oryza sativa subsp. japonica	Zinc finger A20 and AN1 domain-containing stress-associated protein 11	75.806%	Swiss-Prot	weak database homology
`Q0DJC7`	Oryza sativa subsp. japonica	Zinc finger AN1 domain-containing stress-associated protein 15	68.254%	Swiss-Prot	weak database homology

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