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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G229030
Reference: TK1151 Chr: Chr08 Coordinates: 59640743-59642386 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

880 bp · TkA08G229030|TK1151|cDNA

CAATGGCGTGACGAATTACTGTTTCCGAATACGGAAAATGTCGATGGAGAAAAAAGCTGAAAGTGGAAGAAGCAAAAAAGGGGAAACAGCTCCGGCAACGGTGAAAGCCAACGGCAAACGTAAGATTAAGAAAAATGCTGAAGACGATGTACTGGAGGAAGTTCCAATTATTCAGCTCGTAAGTTCCAGTTCTCAAAACCACGAGAGGAATGGAGTGAATACAGAATCATTCGTAGAACAAGTGGGAGTGTCTGGTAAAG...

CDS

Download CDS FASTA

687 bp · TkA08G229030|TK1151|CDS

ATGTCGATGGAGAAAAAAGCTGAAAGTGGAAGAAGCAAAAAAGGGGAAACAGCTCCGGCAACGGTGAAAGCCAACGGCAAACGTAAGATTAAGAAAAATGCTGAAGACGATGTACTGGAGGAAGTTCCAATTATTCAGCTCGTAAGTTCCAGTTCTCAAAACCACGAGAGGAATGGAGTGAATACAGAATCATTCGTAGAACAAGTGGGAGTGTCTGGTAAAGAGGATGTCGTTGATGGTTGTGTAGAGGCGGAGGAGGC...

Protein

Download Protein FASTA

228 aa · TkA08G229030|TK1151|PROTEIN

MSMEKKAESGRSKKGETAPATVKANGKRKIKKNAEDDVLEEVPIIQLVSSSSQNHERNGVNTESFVEQVGVSGKEDVVDGCVEAEEATKSNEVSKKKKKKKEKAKDEVKEDTNQKKKKEVGEEIGEKDSSSLYQIPMNRVSRIIKVEDPNVRITQDAVFIINKASEKFLELFTTEAYGSAFLDRKKHIGYKHLSSVVSKRRRFDFLSDFVPEKVKAEDALKESPAVDT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G229030
TK1151 IDTkA08G229030
OH-1004 IDLXL04_033076
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)90.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G229030
LocationChr08:59640743-59642386 (+)
DescriptionSimilar to DPB3: DNA polymerase epsilon subunit C (Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07980 Transcription factor which promotes the expression of heat stress-inducible genes by contributing to the formation of a heat stress-specific transcriptional complex with NF-Y subunits (e.g. NF-YA2 and NF-YB3) and DREB2A at the promoter of target genes, thus promoting heat tolerance.
Arabidopsis DPB3-1, a DREB2A interactor, specifically enhances heat stress-induced gene expression by forming a heat stress-specific transcriptional complex with NF-Y subunits.2014 · DOI: 10.1105/tpc.114.132928
Nuclear moonlighting of cytosolic glyceraldehyde-3-phosphate dehydrogenase regulates Arabidopsis response to heat stress.2020 · DOI: 10.1038/s41467-020-17311-4

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033076 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006275 regulation of DNA replication Biological Process
GO:0006334 nucleosome assembly Biological Process
GO:0006335 DNA replication-dependent chromatin assembly Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009408 response to heat Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0040029 epigenetic regulation of gene expression Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0140529 CMG complex assembly Biological Process
KEGG gene cross-reference
ath:AT1G07980
dha:DEHA2B06820g
hsa:54108
mmu:93696
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.982
Rank 1 · TkA08G229030 · TK1151
Cytoplasm0.067
Rank 2 · TkA08G229030 · TK1151
Cell membrane0.017
Rank 3 · TkA08G229030 · TK1151
Endoplasmic reticulum0.011
Rank 4 · TkA08G229030 · TK1151
Mitochondrion0.006
Rank 5 · TkA08G229030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00808CBFD_NFYB_HMF25-36 aa
PF02932Neur_chan_memb26-129 aa
PF28586DUF844040-65 aa
PF06284Cytomega_UL8474-129 aa
PF28586DUF844083-147 aa
PF07891DUF166685-147 aa
PF19558DUF608085-144 aa
PF00808CBFD_NFYB_HMF87-100 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G229030PF00808CBFD_NFYB_HMF25364.8e-1349.9
TkA08G229030PF02932Neur_chan_memb261291.79.5
TkA08G229030PF28586DUF844040650.4212.0
TkA08G229030PF06284Cytomega_UL84741296.85.8
TkA08G229030PF28586DUF8440831470.4212.0
TkA08G229030PF07891DUF1666851470.1712.3
TkA08G229030PF19558DUF6080851444.16.6
TkA08G229030PF00808CBFD_NFYB_HMF871004.8e-1349.9
TkA08G229030PF00125Histone961051e-0629.8
TkA08G229030PF09415CENP-X971050.4811.5
TkA08G229030PF00808CBFD_NFYB_HMF1091204.8e-1349.9
TkA08G229030PF00125Histone1271971e-0629.8
TkA08G229030PF00808CBFD_NFYB_HMF1341974.8e-1349.9
TkA08G229030PF09415CENP-X1461770.4811.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LN09Arabidopsis thalianasp|Q9LN09|DPB31_ARATH DNA polymerase II subunit B3-156.200%Swiss-ProtLow

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