TkA08G213630 | RubberDandelionOmics

Gene overview

TkA08G213630

Reference: TK1151 Chr: Chr08 Coordinates: 55893967-55898100 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1164 bp · TkA08G213630|TK1151|cDNA

ATGTATGGTGGAAATTAGTAGGTGGGGTAATATCATAGAATCCCAAGAGAAAAAACAAAAACAAACGTACACGGCGTTAACGCCAACACAAGTTTACCTAATTGACGTCTCCTCCACTATACTCTACTCTGAGAGTATCTAGTTAATCTCTTCAGTGGGAATCTGCTAATCTTGCAGCTACTGGTGAGCTTTTACATAGATCGAGGAGATATGGGGGTAGTGAAGGCGGCGATTGGCGATGGGGTGTTGACTTTCATGTG...

CDS

Download CDS FASTA

732 bp · TkA08G213630|TK1151|CDS

ATGGGGGTAGTGAAGGCGGCGATTGGCGATGGGGTGTTGACTTTCATGTGGGTATTCTGTGCTTCCACCCTCGGTGCTGCTACTTCCGTCATCGCCACGGCCGTCGGGATCCAAGGGATGGCGTCCCTTTTGATTACAATCTCCCTCGTATTCATCCTTTTGCTCATCTTTGGTGTTATTGGGGATGCGTTGGGTGGAGCTAGCTTCAATCCTACCGGTACTGCTGCGTTCTACGCTGCTGGTCTCGGTCGCGATTCCCT...

Protein

Download Protein FASTA

243 aa · TkA08G213630|TK1151|PROTEIN

MGVVKAAIGDGVLTFMWVFCASTLGAATSVIATAVGIQGMASLLITISLVFILLLIFGVIGDALGGASFNPTGTAAFYAAGLGRDSLVSAAVRFPAQALGAVGGALAIVEVMPSEYKHKLGGPSLKVDQHTGAIAEGVLTFIVSLLVLSIILKGPKSPLIKNFLLSTSIVTMVVAGSSYTGPSMNPANAFGWAYVNKRHDTWEHFYVYWICPFVGAIFAGWVFRLFFPHQSKTKVKKTKTKKA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G213630`
TK1151 ID	TkA08G213630
OH-1004 ID	LXL04_032923
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	51.400
Protein coverage (%)	TK1151 100.000 / OH-1004 83.128 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G213630

Location Chr08:55893967-55898100 (-)

Description Similar to SIP1-1: Aquaporin SIP1-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g04090`	Water channel required to facilitate the transport of water across cell membrane.	No verified direct reference in this release
`At5g18290`	Water channel required to facilitate the transport of water across cell membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0182200`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032923 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0016020 membrane Cellular Component

GO:0015250 water channel activity Molecular Function

KEGG gene cross-reference

dosa:Os01g0182200

zma:541892

zma:542494

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.586

Rank 1 · TkA08G213630 · TK1151

Lysosome / Vacuole0.157

Rank 2 · TkA08G213630 · TK1151

Cell membrane0.137

Rank 3 · TkA08G213630 · TK1151

Cytoplasm0.087

Rank 4 · TkA08G213630 · TK1151

Golgi apparatus0.056

Rank 5 · TkA08G213630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00230MIP4-223 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G213630	`PF00230`	MIP	4	223	4e-21	76.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M8W5`	Arabidopsis thaliana	sp\|Q9M8W5\|SIP11_ARATH Aquaporin SIP1-1	54.800%	Swiss-Prot	High
`Q9FK43`	Arabidopsis thaliana	sp\|Q9FK43\|SIP12_ARATH Probable aquaporin SIP1-2	54.100%	Swiss-Prot	High
`Q5VR89`	Oryza sativa subsp. japonica	sp\|Q5VR89\|SIP11_ORYSJ Aquaporin SIP1-1	61.300%	Swiss-Prot	High

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