LXL04_032923 | RubberDandelionOmics

Gene overview

LXL04_032923

Reference: OH-1004 Chr: Chr07 Coordinates: 31696259-31702020 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1710 bp · LXL04_032923|LXL04_032923|OH1004|cDNA

ATGGCCGGCGAAGTACCACTCCAAATTAAATCGCCGGGGGACAACGGAGGTCCGCAAGACGCACCGGAACCAGGCCGGTCGGAGATGTCTGATATGATCGCCAAGGATTCAAACTGCGAACTCCCTCACAAAAACGAAGTCTTCCTGGGCGTTTGGACCCGCCGGAAGGAAGAGAGGACGCCGGAAAAAGAAGCGCCGCCGGTAGGGTTTTGTAGGCTTAGTGCCTTCTTTGAGCCCTCTCTTgtttatcttattCTACT...

CDS

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1710 bp · LXL04_032923|LXL04_032923|OH1004|CDS

ATGGCCGGCGAAGTACCACTCCAAATTAAATCGCCGGGGGACAACGGAGGTCCGCAAGACGCACCGGAACCAGGCCGGTCGGAGATGTCTGATATGATCGCCAAGGATTCAAACTGCGAACTCCCTCACAAAAACGAAGTCTTCCTGGGCGTTTGGACCCGCCGGAAGGAAGAGAGGACGCCGGAAAAAGAAGCGCCGCCGGTAGGGTTTTGTAGGCTTAGTGCCTTCTTTGAGCCCTCTCTTGTTTATCTTATTCTACT...

Protein

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569 aa · LXL04_032923|LXL04_032923|OH1004|PROTEIN

MAGEVPLQIKSPGDNGGPQDAPEPGRSEMSDMIAKDSNCELPHKNEVFLGVWTRRKEERTPEKEAPPVGFCRLSAFFEPSLVYLILLVSFYIDRGDMGVVKAAIGDGVLTFMWVFCASTLGAATSVIATAVGIQGMASLLITISLVFILLLIFGVIGDALGGASFNPTGTAAFYAAGLGRDSLVSAAVRFPAQSSTVFLNPACLNLSLLSSSPTTNLVSTEASASCCLAQICPCSHSGLKRSKNMEIDEQVAMFLHVLAH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032923`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032923

Location Chr07:31696259-31702020 (-)

Description Similar to SIP1-1: Aquaporin SIP1-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g04090`	Water channel required to facilitate the transport of water across cell membrane.	No verified direct reference in this release
`At5g18290`	Water channel required to facilitate the transport of water across cell membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0182200`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032923 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0016020 membrane Cellular Component

GO:0015250 water channel activity Molecular Function

KEGG gene cross-reference

dosa:Os01g0182200

zma:541892

zma:542494

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.431

Rank 1 · LXL04_032923 · OH-1004

Cell membrane0.197

Rank 2 · LXL04_032923 · OH-1004

Nucleus0.152

Rank 3 · LXL04_032923 · OH-1004

Cytoplasm0.149

Rank 4 · LXL04_032923 · OH-1004

Golgi apparatus0.095

Rank 5 · LXL04_032923 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26138.1DUF8040236-290 aa

PF00230.26MIP425-549 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032923	`PF26138.1`	DUF8040	236	290	7.7e-17	61.7
LXL04_032923	`PF00230.26`	MIP	425	549	9.6e-17	62.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M8W5`	Arabidopsis thaliana	Aquaporin SIP1-1	57.983%	Swiss-Prot	weak database homology
`Q9FK43`	Arabidopsis thaliana	Probable aquaporin SIP1-2	48.214%	Swiss-Prot	weak database homology
`Q5VR89`	Oryza sativa subsp. japonica	Aquaporin SIP1-1	69.167%	Swiss-Prot	weak database homology

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