TkA08G200340 | RubberDandelionOmics

Gene overview

TkA08G200340

Reference: TK1151 Chr: Chr08 Coordinates: 52296694-52309802 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1583 bp · TkA08G200340|TK1151|cDNA

CGGGTGAAGGTGAATAGTTTTCAATTTCTAGGTGGATCATAATATACAAGTCTTAACAACTAGCGACGGTGGACACCCCTCTCATATCAACCCAAACCCCCTGTGCGTCTCACATTCATCTGCAACCGTATTCCGTTGATTATAACACGAACTGAATTTCGAGCCATGAAATTAGCTTCGATAATTCAAAATGGGATTCATCACCCGCTTAATCTTGATCTGGGAGTGGGATTGCTTAGATTTACTCCAGTTTCACCTTC...

CDS

Download CDS FASTA

2247 bp · TkA08G200340|TK1151|CDS

ATGGTGAAACCCTTTTGGAGACCGTGTGTCGGGGGTGCACAGAGTGGAAGAACAGATGGGTTGTTGTGGTACAAAGATTTGGGGGCTCATGTAAACGGAGAGTTTTCAATGGCGGTGGTTCAAGCTAACAGTTTGTTGGAGGATCAAAGCCAGATCGAATCAGGACCGTTGGATTCGACGAATTCAGGGCCTTTTGGGACGTTTATCGGTGTCTATGATGGACATGGTGGGCCAGAATCATCGCGATTTGTGAACGAAAA...

Protein

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748 aa · TkA08G200340|TK1151|PROTEIN

MVKPFWRPCVGGAQSGRTDGLLWYKDLGAHVNGEFSMAVVQANSLLEDQSQIESGPLDSTNSGPFGTFIGVYDGHGGPESSRFVNENLFSNLKKFVSEDEEMSADAIKKAFLATEDQFISIVRDQWRTCPQFACVGTCCLVGVICDGVIYIANAGDSRVVLGRANNDGDGVSAIQLSEEHNVNRECVRDELRSLHPDDPKIVVMKHNVWRVKGLIQVSRSIGDAYLKNPEFNRAPLLPKFRVSQSFSKQILSPEPSISTH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G200340`
TK1151 ID	TkA08G200340
OH-1004 ID	LXL04_032713
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.600
Protein coverage (%)	TK1151 100.000 / OH-1004 98.737 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G200340

Location Chr08:52296694-52309802 (-)

Description Similar to PP2C38: Probable protein phosphatase 2C 38

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12620`	May dephosphorylate and repress plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness (By similarity).	The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1.2016 · DOI: 10.1371/journal.ppat.1005811
`At3g55050`	May dephosphorylate and repress plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release
`At3g51370`	May dephosphorylate and repress plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release
`At5g66080`	May dephosphorylate and repress plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release
`At5g12130`	Integral thylakoid membrane protein that plays a crucial role in thylakoid membrane biogenesis and thylakoid formation in early chloroplast development.	Deletion of the chloroplast-localized AtTerC gene product in Arabidopsis thaliana leads to loss of the thylakoid membrane and to seedling lethality.2008 · DOI: 10.1111/j.1365-313x.2008.03523.x The Arabidopsis Tellurite resistance C protein together with ALB3 is involved in photosystem II protein synthesis.2014 · DOI: 10.1111/tpj.12474

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0717800`	Probable protein phosphatase 2C 60.	No verified direct reference in this release
`Os03g0137200`	Probable protein phosphatase 2C 28.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032713 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:1900425 negative regulation of defense response to bacterium Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G12620

ath:AT3G51370

ath:AT3G55050

dosa:Os03g0137200

dosa:Os06g0717800

osa:4331548

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.831

Rank 1 · TkA08G200340 · TK1151

Golgi apparatus0.071

Rank 2 · TkA08G200340 · TK1151

Endoplasmic reticulum0.059

Rank 3 · TkA08G200340 · TK1151

Cytoplasm0.046

Rank 4 · TkA08G200340 · TK1151

Cell membrane0.044

Rank 5 · TkA08G200340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481PP2C67-311 aa

PF13672PP2C_271-286 aa

PF03741TerC517-746 aa

PF06177QueT541-574 aa

PF06177QueT688-745 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G200340	`PF00481`	PP2C	67	311	6.4e-38	131.6
TkA08G200340	`PF13672`	PP2C_2	71	286	0.0036	17.7
TkA08G200340	`PF03741`	TerC	517	746	5.9e-58	196.6
TkA08G200340	`PF06177`	QueT	541	574	1.9	9.6
TkA08G200340	`PF06177`	QueT	688	745	1.9	9.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LHJ9`	Arabidopsis thaliana	sp\|Q9LHJ9\|P2C38_ARATH Probable protein phosphatase 2C 38	64.700%	Swiss-Prot	High
`Q94CL8`	Arabidopsis thaliana	sp\|Q94CL8\|P2C48_ARATH Probable protein phosphatase 2C 48	62.500%	Swiss-Prot	High
`Q9SD12`	Arabidopsis thaliana	sp\|Q9SD12\|P2C46_ARATH Probable protein phosphatase 2C 46	65.800%	Swiss-Prot	High
`Q9FKX4`	Arabidopsis thaliana	sp\|Q9FKX4\|P2C79_ARATH Probable protein phosphatase 2C 79	66.600%	Swiss-Prot	Low
`F4JZG9`	Arabidopsis thaliana	sp\|F4JZG9\|TERC_ARATH Thylakoid membrane protein TERC, chloroplastic	63.700%	Swiss-Prot	High
`Q5Z8P0`	Oryza sativa subsp. japonica	sp\|Q5Z8P0\|P2C60_ORYSJ Probable protein phosphatase 2C 60	64.900%	Swiss-Prot	High
`Q10S32`	Oryza sativa subsp. japonica	sp\|Q10S32\|P2C28_ORYSJ Probable protein phosphatase 2C 28	64.800%	Swiss-Prot	High

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