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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G198460
Reference: TK1151 Chr: Chr08 Coordinates: 51753838-51757073 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1865 bp · TkA08G198460|TK1151|cDNA

TCAAGACTTCGCACTAGTAACATTTGACATTAGGTATACGGTAACCCCGCAACTGCTGATTTGAAACAACAACCCCCACATTGGATCCTGTTGTGCTTGATATTCAACATCACTACAGAGAGTTTTGCTTGAGAACAAGTTGAAAACCTGAACTTGCTCCGTTTTTGTAGTCAAAACAATGGCCGATGAAAGCGCAGCGACACCCAAAAGAGACCCCATCAAGAATCTCGTTGGGAGCACTGCTGCACAAAAGAGAAAAC...

CDS

Download CDS FASTA

1560 bp · TkA08G198460|TK1151|CDS

ATGGCCGATGAAAGCGCAGCGACACCCAAAAGAGACCCCATCAAGAATCTCGTTGGGAGCACTGCTGCACAAAAGAGAAAACAAAATGCAGTCTCAGTCGGTAAAGAACGAAGAGAAGCTTTATTCAGAACCAAACGACTATGTAGAGCAGGAGTCAGCACCGATACAGACATTCCCATTGATGATAACGACATGATGATAGAAGAAGAACAATCAATTCTAGAGTCCCAAACTACTTCAGCTGTCCAAGAATTAAACCT...

Protein

Download Protein FASTA

519 aa · TkA08G198460|TK1151|PROTEIN

MADESAATPKRDPIKNLVGSTAAQKRKQNAVSVGKERREALFRTKRLCRAGVSTDTDIPIDDNDMMIEEEQSILESQTTSAVQELNLAITFQGKGAVQKKVNALRELRRLLSKSEFPPIETAIKSGAIPLLAQCLSFGSQDEQLLEAAWCLTNIAAGKPEETRALLPALPLLIAHIGEKSSVPVAEQCAWAIGNVAGEGDELRQILISQGALLPLAKMMLPNKGSTVRTAAWALSNLIKGPDPKAATELIKVDGVVEAIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G198460
TK1151 IDTkA08G198460
OH-1004 IDLXL04_032694
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G198460
LocationChr08:51753838-51757073 (+)
DescriptionSimilar to IMPA9: Importin subunit alpha-9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g03070 Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity). No verified direct reference in this release
At3g06720 Binds to conventional NLS motifs with high affinity in the absence of an importin beta subunit.
SWO1 modulates cell wall integrity under salt stress by interacting with importin ɑ in Arabidopsis.2021 · DOI: 10.1007/s44154-021-00010-5

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0158000 Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. No verified direct reference in this release
Os05g0155601 Functions in nuclear protein import. No verified direct reference in this release
Os01g0253300 Functions in nuclear protein import. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032694 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006606 protein import into nucleus Biological Process
GO:0006607 NLS-bearing protein import into nucleus Biological Process
GO:0006612 protein targeting to membrane Biological Process
GO:0031144 proteasome localization Biological Process
GO:0051170 import into nucleus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0032991 protein-containing complex Cellular Component
GO:0042564 NLS-dependent protein nuclear import complex Cellular Component
KEGG gene cross-reference
ath:AT1G02690
ath:AT5G03070
dosa:Os01g0158000
sce:YNL189W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.604
Rank 1 · TkA08G198460 · TK1151
Nucleus0.458
Rank 2 · TkA08G198460 · TK1151
Cell membrane0.066
Rank 3 · TkA08G198460 · TK1151
Golgi apparatus0.059
Rank 4 · TkA08G198460 · TK1151
Endoplasmic reticulum0.054
Rank 5 · TkA08G198460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05004IFRD61-195 aa
PF25598ARM_PUB92-140 aa
PF30746TMCO694-502 aa
PF00514Arm100-116 aa
PF00514Arm117-156 aa
PF16201NopRA1123-157 aa
PF13646HEAT_2126-191 aa
PF03130HEAT_PBS127-136 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G198460PF05004IFRD611950.001218.6
TkA08G198460PF25598ARM_PUB921400.07513.2
TkA08G198460PF30746TMCO6945022.8e-2176.5
TkA08G198460PF00514Arm1001161.2e-37127.5
TkA08G198460PF00514Arm1171561.2e-37127.5
TkA08G198460PF16201NopRA11231570.0001322.3
TkA08G198460PF13646HEAT_21261912.6e-0525.1
TkA08G198460PF03130HEAT_PBS1271360.6911.4
TkA08G198460PF13646HEAT_21312342.6e-0525.1
TkA08G198460PF02985HEAT1391551.310.2
TkA08G198460PF08324PUL1411960.01615.2
TkA08G198460PF13513HEAT_EZ1451955.3e-0937.1
TkA08G198460PF03130HEAT_PBS1461730.6911.4
TkA08G198460PF00514Arm1681961.2e-37127.5
TkA08G198460PF02985HEAT1691961.310.2
TkA08G198460PF13646HEAT_21712502.6e-0525.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4KF65Arabidopsis thalianasp|F4KF65|IMPA9_ARATH Importin subunit alpha-968.200%Swiss-ProtHigh
Q96321Arabidopsis thalianasp|Q96321|IMPA1_ARATH Importin subunit alpha-132.000%Swiss-ProtMedium
Q9FYP9Oryza sativa subsp. japonicasp|Q9FYP9|IMAP2_ORYSJ Importin subunit alpha-256.400%Swiss-ProtHigh
Q9SLX0Oryza sativa subsp. japonicasp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b26.500%Swiss-ProtLow
Q71VM4Oryza sativa subsp. japonicasp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a31.700%Swiss-ProtMedium

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