LXL04_032694 | RubberDandelionOmics

Gene overview

LXL04_032694

Reference: OH-1004 Chr: Chr07 Coordinates: 27934673-27937598 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1560 bp · LXL04_032694|LXL04_032694|OH1004|cDNA

ATGGCCGATGAAAGCGCAGCGACACCCAAAAGAGACCCCATCAAGAATCCCGTTGGGAGCACTGCTGCACAAAAGAGAAAACAAAATGCAGTCTCAGTCGGTAAAGAACGAAGAGAAGCTTTATTCAGAACCAAACGACTATGTAGAGCAGGAGTCAGCACCGATACAGACATTCCCATTGATGATAACGACATGATGATAGAAGAAGAACAATCAATTCTAGAGTCCCAAACTACTTCAGCTGTCCAAGAATTAAACCT...

CDS

Download CDS FASTA

1560 bp · LXL04_032694|LXL04_032694|OH1004|CDS

ATGGCCGATGAAAGCGCAGCGACACCCAAAAGAGACCCCATCAAGAATCCCGTTGGGAGCACTGCTGCACAAAAGAGAAAACAAAATGCAGTCTCAGTCGGTAAAGAACGAAGAGAAGCTTTATTCAGAACCAAACGACTATGTAGAGCAGGAGTCAGCACCGATACAGACATTCCCATTGATGATAACGACATGATGATAGAAGAAGAACAATCAATTCTAGAGTCCCAAACTACTTCAGCTGTCCAAGAATTAAACCT...

Protein

Download Protein FASTA

519 aa · LXL04_032694|LXL04_032694|OH1004|PROTEIN

MADESAATPKRDPIKNPVGSTAAQKRKQNAVSVGKERREALFRTKRLCRAGVSTDTDIPIDDNDMMIEEEQSILESQTTSAVQELNLAITFQGKGAVQKKVNALRELRRLLSKSEFPPIETAIKSGAIPLLAQCLSFGSQHEQLLEAAWCLTNIAAGKPEETRALLPALPLLIAHIGEKSSVPVAEQCAWAIGNVAGEGDELRQILISQGALLPLAKMMLPNKGSTVRTAAWALSNLIKGPDPKAATELIKVDGVVEAIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032694`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032694

Location Chr07:27934673-27937598 (+)

Description Similar to IMPA9: Importin subunit alpha-9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03070`	Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity).	No verified direct reference in this release
`At1g02690`	Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0158000`	Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.	No verified direct reference in this release
`Os01g0253300`	Functions in nuclear protein import.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032694 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006606 protein import into nucleus Biological Process

GO:0006607 NLS-bearing protein import into nucleus Biological Process

GO:0006612 protein targeting to membrane Biological Process

GO:0031144 proteasome localization Biological Process

GO:0051170 import into nucleus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0032991 protein-containing complex Cellular Component

GO:0042564 NLS-dependent protein nuclear import complex Cellular Component

KEGG gene cross-reference

ath:AT1G02690

ath:AT5G03070

dosa:Os01g0158000

sce:YNL189W

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.604

Rank 1 · LXL04_032694 · OH-1004

Nucleus0.461

Rank 2 · LXL04_032694 · OH-1004

Cell membrane0.065

Rank 3 · LXL04_032694 · OH-1004

Golgi apparatus0.059

Rank 4 · LXL04_032694 · OH-1004

Lysosome / Vacuole0.053

Rank 5 · LXL04_032694 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30746.1TMCO694-502 aa

PF00514.30Arm117-156 aa

PF13513.13HEAT_EZ145-195 aa

PF00514.30Arm200-237 aa

PF00514.30Arm344-374 aa

PF00514.30Arm379-415 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032694	`PF30746.1`	TMCO6	94	502	5.8e-21	75.4
LXL04_032694	`PF00514.30`	Arm	117	156	7.1e-38	128.2
LXL04_032694	`PF13513.13`	HEAT_EZ	145	195	8e-09	36.5
LXL04_032694	`PF00514.30`	Arm	200	237	7.1e-38	128.2
LXL04_032694	`PF00514.30`	Arm	344	374	7.1e-38	128.2
LXL04_032694	`PF00514.30`	Arm	379	415	7.1e-38	128.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4KF65`	Arabidopsis thaliana	Importin subunit alpha-9	69.557%	Swiss-Prot	strong database homology
`Q9FWY7`	Arabidopsis thaliana	Importin subunit alpha-6	30.214%	Swiss-Prot	moderate database homology
`Q9FYP9`	Oryza sativa subsp. japonica	Importin subunit alpha-2	62.083%	Swiss-Prot	strong database homology
`Q71VM4`	Oryza sativa subsp. japonica	Importin subunit alpha-1a	30.815%	Swiss-Prot	moderate database homology

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