TkA08G193230 | RubberDandelionOmics

Gene overview

TkA08G193230

Reference: TK1151 Chr: Chr08 Coordinates: 50493563-50495374 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1434 bp · TkA08G193230|TK1151|cDNA

ATGGCGGCTGTTTGGATGGGCACACAAGCCGATGAATCATTTCCCGACGCCTGGCATTTAGATGCTCAATCATTTAACAACGGTGATAGTGCTACAAATATTCGGTCAAAAGTGTATCTATCCCCTAGACTGTGGTACCTGCGGGTTCATATAATAGAAGCTCAAGAATTGCAGACCATCAATAACAACAAACCGCCGGAAATTGTCGTGAAAGGGAACGAAGATTTGATGTTCGTAGTAGCTGAACCATTCGACGAACA...

CDS

Download CDS FASTA

1434 bp · TkA08G193230|TK1151|CDS

ATGGCGGCTGTTTGGATGGGCACACAAGCCGATGAATCATTTCCCGACGCCTGGCATTTAGATGCTCAATCATTTAACAACGGTGATAGTGCTACAAATATTCGGTCAAAAGTGTATCTATCCCCTAGACTGTGGTACCTGCGGGTTCATATAATAGAAGCTCAAGAATTGCAGACCATCAATAACAACAAACCGCCGGAAATTGTCGTGAAAGGGAACGAAGATTTGATGTTCGTAGTAGCTGAACCATTCGACGAACA...

Protein

Download Protein FASTA

477 aa · TkA08G193230|TK1151|PROTEIN

MAAVWMGTQADESFPDAWHLDAQSFNNGDSATNIRSKVYLSPRLWYLRVHIIEAQELQTINNNKPPEIVVKGNEDLMFVVAEPFDEQLVLSVEEMVAKYGQKWIRTRTVIDSLNPKWNEQYTWEVFDPCTVITIVVFDNCMNATATGTGSKDSRIGKVRIRLSTLETDRVYTHSYPLIVLHPSGVKKTGEIQLAVRFTCVSVLNLMQIYSQPLLPTMHYVQPLSIFQQDSLRHQAAQIVTMRLNRAEPPLKREVVEYMLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G193230`
TK1151 ID	TkA08G193230
OH-1004 ID	LXL04_032648
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	78.900
Protein coverage (%)	TK1151 100.000 / OH-1004 75.093 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G193230

Location Chr08:50493563-50495374 (-)

Description Similar to FTIP3: FT-interacting protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g57880`	Required for proliferation and differentiation of shoot stem cells in the shoot apical meristem (SAM), thus determining the appropriate balance between the maintenance of shoot stem cells and their differentiation into other aboveground plant parts via the control of subcellular localization and intercellular trafficking of STM in the shoot apex.	FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis.2018 · DOI: 10.1016/j.celrep.2018.04.033
`At1g51570`	Required for proliferation and differentiation of shoot stem cells in the shoot apical meristem (SAM), thus determining the appropriate balance between the maintenance of shoot stem cells and their differentiation into other aboveground plant parts via the control of subcellular localization and intercellular trafficking of STM in the shoot apex.	FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis.2018 · DOI: 10.1016/j.celrep.2018.04.033
`At5g12970`	May function as a signaling molecule by regulating the trafficking of other regulators.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0370600`	Promotes nuclear translocation of the transcription factor OSH1, which directly suppresses the auxin biosynthetic gene YUCCA4 during the late development of anthers.	OsFTIP7 determines auxin-mediated anther dehiscence in rice.2018 · DOI: 10.1038/s41477-018-0175-0
`Os06g0614000`	Involved in the export of the long day-specific flower- promoting signal (florigen) RFT1 from the phloem companion cells to sieve elements.	OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDKγ4.2017 · DOI: 10.1105/tpc.16.00728

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032648 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009663 plasmodesma organization Biological Process

GO:0009901 anther dehiscence Biological Process

GO:0009908 flower development Biological Process

GO:0009911 positive regulation of flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0010930 negative regulation of auxin mediated signaling pathway Biological Process

GO:0048574 long-day photoperiodism, flowering Biological Process

GO:0048578 positive regulation of long-day photoperiodism, flowering Biological Process

GO:1902182 shoot apical meristem development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G51570

ath:AT3G57880

ath:AT5G06850

ath:AT5G12970

dosa:Os05g0370600

osa:4338582

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.492

Rank 1 · TkA08G193230 · TK1151

Cell membrane0.230

Rank 2 · TkA08G193230 · TK1151

Cytoplasm0.153

Rank 3 · TkA08G193230 · TK1151

Golgi apparatus0.136

Rank 4 · TkA08G193230 · TK1151

Nucleus0.077

Rank 5 · TkA08G193230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00168C245-177 aa

PF06398Pex24p264-460 aa

PF11696DUF3292271-336 aa

PF04842DUF639285-332 aa

PF08372PRT_C292-314 aa

PF02453Reticulon297-333 aa

PF08372PRT_C323-477 aa

PF11696DUF3292383-444 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G193230	`PF00168`	C2	45	177	3.4e-17	63.3
TkA08G193230	`PF06398`	Pex24p	264	460	8.2e-08	32.4
TkA08G193230	`PF11696`	DUF3292	271	336	0.011	14.8
TkA08G193230	`PF04842`	DUF639	285	332	0.019	15.1
TkA08G193230	`PF08372`	PRT_C	292	314	1.1e-71	240.4
TkA08G193230	`PF02453`	Reticulon	297	333	7.3	7.2
TkA08G193230	`PF08372`	PRT_C	323	477	1.1e-71	240.4
TkA08G193230	`PF11696`	DUF3292	383	444	0.011	14.8
TkA08G193230	`PF04842`	DUF639	405	451	0.019	15.1
TkA08G193230	`PF02453`	Reticulon	406	442	7.3	7.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2R0`	Arabidopsis thaliana	sp\|Q9M2R0\|FTIP3_ARATH FT-interacting protein 3	51.500%	Swiss-Prot	High
`Q9C8H3`	Arabidopsis thaliana	sp\|Q9C8H3\|FTIP4_ARATH FT-interacting protein 4	50.500%	Swiss-Prot	High
`Q9LXU2`	Arabidopsis thaliana	sp\|Q9LXU2\|MCTP5_ARATH Multiple C2 domain and transmembrane region protein 5	51.300%	Swiss-Prot	High
`Q60EW9`	Oryza sativa subsp. japonica	sp\|Q60EW9\|FTIP7_ORYSJ FT-interacting protein 7	51.600%	Swiss-Prot	High
`Q69T22`	Oryza sativa subsp. japonica	sp\|Q69T22\|FTIP1_ORYSJ FT-interacting protein 1	46.600%	Swiss-Prot	Medium

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