TkA08G165070 | RubberDandelionOmics

Gene overview

TkA08G165070

Reference: TK1151 Chr: Chr08 Coordinates: 43096633-43115675 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

13250 bp · TkA08G165070|TK1151|cDNA

AACACTTCATTAATTAGAATGTCGACCTGAAAGCTGGCGAATTATTAAGAAAACAAAAATAGAAACACAAAAACGAAAAAAACACACCACTTCACACACACTCCATCGCACCGCCAAGGTCCCTTTGATTTTCGTTCCCCCCTCTCTCTTTCATACAACCGTCCGCAAACTCTGAAAAAATCACAAATTATTCCGTCATTTTGTTTTTTTTTATCAGAGGCCACATCGCGTTTCCCAATTAAAACTTTCCTTTATCAGCG...

CDS

Download CDS FASTA

5883 bp · TkA08G165070|TK1151|CDS

ATGTGTGCAAACCCTGTTCAGTTCACTAAAGTTGCTCATATTATTATCAAAGGAGTGGATGAGGCTGTTTTCTGGTACCCAGTTGCACCTCCAGGTTATGCTGCTATGGGATGTGTAGTTACTAGAACAGATAAAATGCCAAAATTGAATATTCTTTGCTGTCCGAAAAACGATCTTGTTAAACAAGCTAATATTCATGAAAATCCTATATCAAAATGTCAAAGTTCAAAAGCTAATCAAAGCTGGAGTATCTGGAAAGT...

Protein

Download Protein FASTA

1960 aa · TkA08G165070|TK1151|PROTEIN

MCANPVQFTKVAHIIIKGVDEAVFWYPVAPPGYAAMGCVVTRTDKMPKLNILCCPKNDLVKQANIHENPISKCQSSKANQSWSIWKVDNQANTFLARSDMKQPSPRLAFTIGDSMKPKTRDNIMAEIKLKCFSLTILDSLCGMITPFLDLTVTNIKLATHGGMDSMNAVLISSIAASTFNAQLDSWEPIVEPFDGIFKFETYDTNEQVGKKARIAATSALNVNISAANIDTFAETIVAWRRLRELEQKEIKSNEETSSRN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G165070`
TK1151 ID	TkA08G165070
OH-1004 ID	LXL04_026198
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	25.000
Protein coverage (%)	TK1151 95.000 / OH-1004 39.522 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G165070`
Location	Chr08:43096633-43115675 (+)
Description	Similar to vps13A: Putative vacuolar protein sorting-associated protein 13A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026198` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006623 protein targeting to vacuole Biological Process GO:0006869 lipid transport Biological Process GO:0007005 mitochondrion organization Biological Process GO:0045053 protein retention in Golgi apparatus Biological Process GO:0045324 late endosome to vacuole transport Biological Process GO:0120009 intermembrane lipid transfer Biological Process GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005811 lipid droplet Cellular Component GO:0016020 membrane Cellular Component GO:0005543 phospholipid binding Molecular Function GO:0120014 phospholipid transfer activity Molecular Function
KEGG gene cross-reference	cthr:CTHT_0020450 ddi:DDB_G0274917 ddi:DDB_G0286725 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.286

Rank 1 · TkA08G165070 · TK1151

Endoplasmic reticulum0.246

Rank 2 · TkA08G165070 · TK1151

Cell membrane0.243

Rank 3 · TkA08G165070 · TK1151

Golgi apparatus0.231

Rank 4 · TkA08G165070 · TK1151

Nucleus0.168

Rank 5 · TkA08G165070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06101Vps624-89 aa

PF25033VPS13_M74-233 aa

PF00168C2337-444 aa

PF25036VPS13_VAB554-590 aa

PF06398Pex24p589-706 aa

PF25036VPS13_VAB826-1275 aa

PF25037VPS13_C1739-1849 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G165070	`PF06101`	Vps62	4	89	1.6e-09	37.4
TkA08G165070	`PF25033`	VPS13_M	74	233	0.0016	17.3
TkA08G165070	`PF00168`	C2	337	444	5e-05	24.2
TkA08G165070	`PF25036`	VPS13_VAB	554	590	2.3e-21	76.6
TkA08G165070	`PF06398`	Pex24p	589	706	6.1e-07	29.5
TkA08G165070	`PF25036`	VPS13_VAB	826	1275	2.3e-21	76.6
TkA08G165070	`PF25037`	VPS13_C	1739	1849	3.9e-14	53.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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