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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G164080
Reference: TK1151 Chr: Chr08 Coordinates: 42852554-42856744 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3471 bp · TkA08G164080|TK1151|cDNA

CAAGCAGTCCCCACCACTTCCCCACACTTTTTTCATTTTCCGTTCCTAATTTCCCTCTGCTTTTCTTTTATTTTACATATTTCTCCGCCGTCCCTAAATCTCTCTCTCTCACTACATCTCAGTGGTGGTTACGTTCTTCTCATTTCTGACTCCAGCACGTGGGCTGTTGTTGTTCGGATCCATGGATATGTTGGTCACTTGCTTCATGATTCCGGTAATGTAAAGAGACGATGCCGATATTTGATGTTACCATTAAGTTT...

CDS

Download CDS FASTA

2787 bp · TkA08G164080|TK1151|CDS

ATGGAGGCTAGATTTGGGGAAAATCCTCATCATTACTATGGCCCAGTGGTGTCCGATTTGAAGGCTGTCGGCAAGAGAACAATGGAGTGGGATTTAAACGACTGGAAATGGGACGCCGATCTGTTTACCGCCACTCCATCTAAACAACTCTTTCCAGTTACATCCGAACTCGATACAAACACAGGTGTGTCTAACACCTCTTCATCTTGTTCTGTCGAAATCAATCTCCAAAACCAGAAAGAGAAGAGGGAGTTGGAGAA...

Protein

Download Protein FASTA

928 aa · TkA08G164080|TK1151|PROTEIN

MEARFGENPHHYYGPVVSDLKAVGKRTMEWDLNDWKWDADLFTATPSKQLFPVTSELDTNTGVSNTSSSCSVEINLQNQKEKRELEKKRRVIVLDEEEFCGEESGALNLKLGGQVYPITEEEADRWDMKTGKKTKVAGTTSNRAVCQVDDCRTDLSNAKDYHRRHKVCELHSKATKALVMNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPENTGNGVSLNDEHGSSYLLISLLRILTNTQSNTSDQKN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G164080
TK1151 IDTkA08G164080
OH-1004 IDLXL04_015343
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)65.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G164080
LocationChr08:42852554-42856744 (+)
DescriptionSimilar to SPL12: Squamosa promoter-binding-like protein 12
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: Q9SMX9 Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. No verified direct reference in this release
At3g60030 Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure.2006 · DOI: 10.1016/j.febslet.2006.03.014

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0833300 Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. No verified direct reference in this release
Os01g0292900 Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. No verified direct reference in this release
UniProt: A2YX04 Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015343 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0001216 DNA-binding transcription activator activity Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G47070
ath:AT3G60030
dosa:Os01g0292900
dosa:Os03g0833300
dosa:Os08g0513700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.520
Rank 1 · TkA08G164080 · TK1151
Cytoplasm0.295
Rank 2 · TkA08G164080 · TK1151
Cell membrane0.111
Rank 3 · TkA08G164080 · TK1151
Endoplasmic reticulum0.081
Rank 4 · TkA08G164080 · TK1151
Mitochondrion0.079
Rank 5 · TkA08G164080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18721CxC6138-162 aa
PF03110SBP146-219 aa
PF18721CxC6165-189 aa
PF00023Ank259-273 aa
PF26102Ig_SPL7517-628 aa
PF13637Ank_4578-586 aa
PF13606Ank_3726-747 aa
PF13637Ank_4727-781 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G164080PF18721CxC61381620.6111.1
TkA08G164080PF03110SBP1462197.1e-30103.9
TkA08G164080PF18721CxC61651890.6111.1
TkA08G164080PF00023Ank2592734.1e-0524.4
TkA08G164080PF26102Ig_SPL75176288.8e-35120.0
TkA08G164080PF13637Ank_45785869.1e-0626.6
TkA08G164080PF13606Ank_37267474.3e-0524.3
TkA08G164080PF13637Ank_47277819.1e-0626.6
TkA08G164080PF12796Ank_27278229.6e-0626.8
TkA08G164080PF00023Ank7277444.1e-0524.4
TkA08G164080PF13857Ank_57277470.003518.4
TkA08G164080PF13857Ank_57637760.003518.4
TkA08G164080PF00023Ank7647844.1e-0524.4
TkA08G164080PF13606Ank_37647854.3e-0524.3
TkA08G164080PF13637Ank_47768219.1e-0626.6
TkA08G164080PF13857Ank_58008110.003518.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SMX9Arabidopsis thalianasp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 150.200%Swiss-ProtHigh
Q9S7P5Arabidopsis thalianasp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 1249.200%Swiss-ProtMedium
Q75LH6Oryza sativa subsp. japonicasp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 639.900%Swiss-ProtMedium
Q9LGU7Oryza sativa subsp. japonicasp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 137.700%Swiss-ProtMedium
A2YX04Oryza sativa subsp. indicasp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 1530.300%Swiss-ProtMedium

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