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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G161180
Reference: TK1151 Chr: Chr08 Coordinates: 42060853-42063403 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2233 bp · TkA08G161180|TK1151|cDNA

GTAACATTTAGTGCATTATTAATTAGTGACATGTAGATACGAATGATTGTTGGCGCTTATAAAAACACCGTCGGTTCTCCCGCAAAAAATCGCCCCTTCCCCCGTCCAAAGAAAAAGGAAAGAAACCAGAGTGAAATCTCTGTTGATTTCCGCCATGATCGCCTCAACAACTCCTTCAAAATCTTCAATTAACCTCACAACCTACGCCACTCCTTTCAAATCTTCGTTCCTCCCTTCATCACCTATAATTCTCCAAAGAT...

CDS

Download CDS FASTA

1851 bp · TkA08G161180|TK1151|CDS

ATGATCGCCTCAACAACTCCTTCAAAATCTTCAATTAACCTCACAACCTACGCCACTCCTTTCAAATCTTCGTTCCTCCCTTCATCACCTATAATTCTCCAAAGATTCTCTCCTTCAACTCCTCGATTTCCATCTCTAAATATCACCAATGTTCTTAAAACCGTCGATTCCCCGAATCTCTCTTCAACCGCCACAAATCTCGATTCCATTTTCACTAATTCTAAACCGACCATACTTGTCTCGGAAAAACTAGGAGAGGC...

Protein

Download Protein FASTA

616 aa · TkA08G161180|TK1151|PROTEIN

MIASTTPSKSSINLTTYATPFKSSFLPSSPIILQRFSPSTPRFPSLNITNVLKTVDSPNLSSTATNLDSIFTNSKPTILVSEKLGEAGLDLLKSFANVDCSYNLSPEDLCSKISMCDALIVRSGTKVNRQIFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHAIALLSAMSRNVAQADASMKAGKWQRTKYVGVSMVGKTLAIMGFGKVGSEVARRAKGLGMHVVAHDPYAPADRARAIGVELI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G161180
TK1151 IDTkA08G161180
OH-1004 IDLXL04_001578
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)79.000
Protein coverage (%)TK1151 88.149 / OH-1004 84.603
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G161180
LocationChr08:42060853-42063403 (-)
DescriptionSimilar to PGDH1: D-3-phosphoglycerate dehydrogenase 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g17745 Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB).
Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis.2013 · DOI: 10.1104/pp.113.226720
Regulation of serine biosynthesis in Arabidopsis. Crucial role of plastidic 3-phosphoglycerate dehydrogenase in non-photosynthetic tissues.1999 · DOI: 10.1074/jbc.274.1.397
At4g34200 Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB).
Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis.2013 · DOI: 10.1104/pp.113.226720
Arabidopsis phosphoglycerate dehydrogenase1 of the phosphoserine pathway is essential for development and required for ammonium assimilation and tryptophan biosynthesis.2013 · DOI: 10.1105/tpc.113.118992
At3g19480 Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001578 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000096 sulfur amino acid metabolic process Biological Process
GO:0006564 L-serine biosynthetic process Biological Process
GO:0009555 pollen development Biological Process
GO:0009561 megagametogenesis Biological Process
GO:0009643 photosynthetic acclimation Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
KEGG gene cross-reference
ath:AT1G17745
ath:AT3G19480
ath:AT4G34200
mja:MJ_1018
mth:MTH_970
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.961
Rank 1 · TkA08G161180 · TK1151
Mitochondrion0.068
Rank 2 · TkA08G161180 · TK1151
Cytoplasm0.040
Rank 3 · TkA08G161180 · TK1151
Peroxisome0.026
Rank 4 · TkA08G161180 · TK1151
Nucleus0.025
Rank 5 · TkA08G161180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF003892-Hacid_dh78-386 aa
PF03446NAD_binding_2103-139 aa
PF22828HphA_N136-178 aa
PF13478XdhC_C141-209 aa
PF03720UDPG_MGDP_dh_C169-210 aa
PF03807F420_oxidored169-196 aa
PF028262-Hacid_dh_C180-354 aa
PF00208ELFV_dehydrog209-242 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G161180PF003892-Hacid_dh783862.2e-35122.0
TkA08G161180PF03446NAD_binding_21031390.05214.3
TkA08G161180PF22828HphA_N1361780.113.7
TkA08G161180PF13478XdhC_C1412090.01716.4
TkA08G161180PF03720UDPG_MGDP_dh_C1692100.02115.9
TkA08G161180PF03807F420_oxidored1691960.0814.3
TkA08G161180PF028262-Hacid_dh_C1803546.3e-61205.5
TkA08G161180PF00208ELFV_dehydrog2092420.02415.0
TkA08G161180PF00670AdoHcyase_NAD2103040.0005720.8
TkA08G161180PF07991KARI_N2133108.5e-0626.2
TkA08G161180PF13478XdhC_C2173190.01716.4
TkA08G161180PF03446NAD_binding_22173050.05214.3
TkA08G161180PF03807F420_oxidored2172800.0814.3
TkA08G161180PF02254TrkA_N2182610.02215.8
TkA08G161180PF03720UDPG_MGDP_dh_C2292750.02115.9
TkA08G161180PF01842ACT2983191e-1041.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O04130Arabidopsis thalianasp|O04130|SERA2_ARATH D-3-phosphoglycerate dehydrogenase 2, chloroplastic80.700%Swiss-ProtHigh
O49485Arabidopsis thalianasp|O49485|SERA1_ARATH D-3-phosphoglycerate dehydrogenase 1, chloroplastic77.600%Swiss-ProtHigh
Q9LT69Arabidopsis thalianasp|Q9LT69|SERA3_ARATH D-3-phosphoglycerate dehydrogenase 3, chloroplastic76.400%Swiss-ProtHigh

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