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How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G142130
Reference: TK1151 Chr: Chr08 Coordinates: 37058730-37059248 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

429 bp · TkA08G142130|TK1151|cDNA

ATGTTTTCACTTTTTGGAGAGTTTGCCGCTGGCAAACTTTTATGGTGGAGTGTCAAAAGTCGAAGAAGCCACCGGCGTGGCCCGGCCGCTAGACTTTGCCGCTGGCAAAGTTTGCCGCTGGAGTCCCCCATACCGCGACGTTCGCCAGCGGCAAACTCACCAATTTCGCATACCGCTGGCCTGTTACCGATCATACCTTCCGGTCTTATGCCTCTAACTCAAAGAATTTCTTTCAGTTTTTTAACGGGTCACTGTCCCAC...

CDS

Download CDS FASTA

429 bp · TkA08G142130|TK1151|CDS

ATGTTTTCACTTTTTGGAGAGTTTGCCGCTGGCAAACTTTTATGGTGGAGTGTCAAAAGTCGAAGAAGCCACCGGCGTGGCCCGGCCGCTAGACTTTGCCGCTGGCAAAGTTTGCCGCTGGAGTCCCCCATACCGCGACGTTCGCCAGCGGCAAACTCACCAATTTCGCATACCGCTGGCCTGTTACCGATCATACCTTCCGGTCTTATGCCTCTAACTCAAAGAATTTCTTTCAGTTTTTTAACGGGTCACTGTCCCAC...

Protein

Download Protein FASTA

142 aa · TkA08G142130|TK1151|PROTEIN

MFSLFGEFAAGKLLWWSVKSRRSHRRGPAARLCRWQSLPLESPIPRRSPAANSPISHTAGLLPIIPSGLMPLTQRISFSFLTGHCPTESLKEIVYSTFLMSFSKYCLNKILGVVCHPFDTVFCIQMSQSLVRVTDHHLLQSG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G142130
TK1151 IDTkA08G142130
OH-1004 IDLXL04_039298
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)86.500
Protein coverage (%)TK1151 36.620 / OH-1004 8.638
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G142130
LocationChr08:37058730-37059248 (-)
DescriptionSimilar to ASA2: Anthranilate synthase alpha subunit 2, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039298 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000162 L-tryptophan biosynthetic process Biological Process
GO:0000278 mitotic cell cycle Biological Process
GO:0006325 chromatin organization Biological Process
GO:0007076 mitotic chromosome condensation Biological Process
GO:0009611 response to wounding Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009851 auxin biosynthetic process Biological Process
GO:0010032 meiotic chromosome condensation Biological Process
GO:0010311 lateral root formation Biological Process
GO:0010600 regulation of auxin biosynthetic process Biological Process
GO:0051301 cell division Biological Process
KEGG gene cross-reference
ath:AT2G29690
ath:AT3G57060
ath:AT5G05730
dosa:Os03g0826500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.441
Rank 1 · TkA08G142130 · TK1151
Cytoplasm0.407
Rank 2 · TkA08G142130 · TK1151
Cell membrane0.141
Rank 3 · TkA08G142130 · TK1151
Mitochondrion0.102
Rank 4 · TkA08G142130 · TK1151
Endoplasmic reticulum0.091
Rank 5 · TkA08G142130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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