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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G135350
Reference: TK1151 Chr: Chr08 Coordinates: 35203924-35206396 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1911 bp · TkA08G135350|TK1151|cDNA

TTTTCACTGCACTTGTCATTTTATAGGCTGCTAAGAACTTTATACTAACCGGCACGTCACCCTAACCTTTATCTTCTACAAACATTGTCTTGCCTTCGAGAAAACCCCTTTTACACAAAAGCCCTAAAACCTCGAATTGAATCTATTACTCTAATCAGGATCGTAACCTGATCATCATTATGTCAGAAGAAGAAATCGCGATAGAAGCAATAAAGCATGCATTGAAGGCTCTTCGGAAGCGGCATCTGCTGGAAGAGGGA...

CDS

Download CDS FASTA

1530 bp · TkA08G135350|TK1151|CDS

ATGTCAGAAGAAGAAATCGCGATAGAAGCAATAAAGCATGCATTGAAGGCTCTTCGGAAGCGGCATCTGCTGGAAGAGGGAGCTCATGGGCCTGCTATTATAGCTCTTTCTAAACCTATTGCTTCTCAGGGTTCAGAATGGAAGGATAAGGCAGAAACTCTCGAATTGGAGCTTCAACAATGTTATAAAGCTCAATCTCGATTATCAGAGCAACTTGTAGTGGAAGTAGCCGAATCTAGAGCCGCAAAATCTTTAGCTCA...

Protein

Download Protein FASTA

509 aa · TkA08G135350|TK1151|PROTEIN

MSEEEIAIEAIKHALKALRKRHLLEEGAHGPAIIALSKPIASQGSEWKDKAETLELELQQCYKAQSRLSEQLVVEVAESRAAKSLAQEKEALIPNLENDLTQARNECSRLSALLEENTKALELLIGENKDLKSQYEEMRSRAINAETENKTLIDRWMLQKMQDAERLNEANALYEDMLGKLKASGLEQLARQQIDGVVRQSEEGAEYYVESTIPTTCAHRIPAHEGGCASILFENTSGKLLTGGQDQTVKMWDTATGQLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G135350
TK1151 IDTkA08G135350
OH-1004 IDLXL04_009466
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)63.200
Protein coverage (%)TK1151 14.931 / OH-1004 76.768
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G135350
LocationChr08:35203924-35206396 (-)
DescriptionSimilar to ATG16: Autophagy-related protein 16
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g50230 May play a role in autophagy. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009466 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000045 autophagosome assembly Biological Process
GO:0015031 protein transport Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT5G50230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.572
Rank 1 · TkA08G135350 · TK1151
Nucleus0.334
Rank 2 · TkA08G135350 · TK1151
Golgi apparatus0.131
Rank 3 · TkA08G135350 · TK1151
Lysosome / Vacuole0.128
Rank 4 · TkA08G135350 · TK1151
Cell membrane0.063
Rank 5 · TkA08G135350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26095CC_Bre141-72 aa
PF08614ATG1643-168 aa
PF27879Mplasa_alph_rch54-171 aa
PF25450Rab11-FIP364-158 aa
PF16529Ge1_WD4065-115 aa
PF30381CEP135_N66-168 aa
PF26052BRE1B70-120 aa
PF07569Hira82-109 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G135350PF26095CC_Bre141723.18.8
TkA08G135350PF08614ATG16431681.6e-1455.3
TkA08G135350PF27879Mplasa_alph_rch541710.4310.2
TkA08G135350PF25450Rab11-FIP3641582.79.0
TkA08G135350PF16529Ge1_WD40651150.1112.1
TkA08G135350PF30381CEP135_N661680.0712.7
TkA08G135350PF26052BRE1B701204.27.9
TkA08G135350PF07569Hira821092.28.5
TkA08G135350PF26095CC_Bre1821473.18.8
TkA08G135350PF30907IPGA1_CC851500.511.4
TkA08G135350PF26052BRE1B1221814.27.9
TkA08G135350PF24506KNTC1_N1462970.006516.5
TkA08G135350PF23869Beta-prop_WDR75_1st2082642e-1557.6
TkA08G135350PF25168Beta-prop_WDR36-Utp21_2nd2093721.4e-28100.8
TkA08G135350PF31099SHKBP1_KCTD3_C2102560.03313.5
TkA08G135350PF25173Beta-prop_WDR3_1st2132959.9e-44149.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6NNP0Arabidopsis thalianasp|Q6NNP0|ATG16_ARATH Autophagy-related protein 1667.600%Swiss-ProtHigh

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