Gene Card
Gene overview
cDNA / CDS / Protein Sequences
300 bp · LXL04_009466|LXL04_009466|OH1004|cDNA
ATGCTTATGCACACGGATGAGTGTTCTCGCTTAACATCACTTTTAGATGAAAATACAAAAGCCATAAAGTTGCTCATAGGCGAAAATCATGACCTCAAGACTAAATATGAAGACATTAGAGCAAAAGCCACCTACGTCGAGTCCGAAAACAAGACGTTAACCGACAGGTGGAAAGCACAGAAATTAAAAGAATCCGAACATCTTAACGAGgTTAACGCTCTATACGAGGATATCTTAAATAAACAAAGTCGACGCCCGAC...
300 bp · LXL04_009466|LXL04_009466|OH1004|CDS
ATGCTTATGCACACGGATGAGTGTTCTCGCTTAACATCACTTTTAGATGAAAATACAAAAGCCATAAAGTTGCTCATAGGCGAAAATCATGACCTCAAGACTAAATATGAAGACATTAGAGCAAAAGCCACCTACGTCGAGTCCGAAAACAAGACGTTAACCGACAGGTGGAAAGCACAGAAATTAAAAGAATCCGAACATCTTAACGAGGTTAACGCTCTATACGAGGATATCTTAAATAAACAAAGTCGACGCCCGAC...
Protein
Download Protein FASTA99 aa · LXL04_009466|LXL04_009466|OH1004|PROTEIN
MLMHTDECSRLTSLLDENTKAIKLLIGENHDLKTKYEDIRAKATYVESENKTLTDRWKAQKLKESEHLNEVNALYEDILNKQSRRPTSYKNSRANKSRK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_009466 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_009466 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr02:126967636-126968014 (-) | ||||||
| Description | Similar to ATG16: Autophagy-related protein 16 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0000045 autophagosome assembly Biological Process GO:0015031 protein transport Biological Process GO:0005634 nucleus Cellular Component | ||||||
| KEGG gene cross-reference | ath:AT5G50230 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q6NNP0 | Arabidopsis thaliana | Autophagy-related protein 16 | 42.105% | Swiss-Prot | moderate database homology |