TkA08G125600 | RubberDandelionOmics

Gene overview

TkA08G125600

Reference: TK1151 Chr: Chr08 Coordinates: 32634442-32636865 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1694 bp · TkA08G125600|TK1151|cDNA

ACACGTCACCTTCCTCACTCCATTATAAATCCATTTCTTCCCCTCACCTTTTCCACTTCATCGTTCACCTCTTGTGTCTTTTCATCACAACCTCCAACAATGAAGCTCCTTCCAATGGCGATTCTCTTGCTTTTTGCTCTTTTCGTCGTCTCATCCGCCATGGACATGTCGATCATAGGCTACGACGCCACTCACATGACCAGCTCCGATGCATCCACGGCAAGCTGGCGCACTGACGACGAAGTCAACGCTATGTACGA...

CDS

Download CDS FASTA

1485 bp · TkA08G125600|TK1151|CDS

ACACGTCACCTTCCTCACTCCATTATAAATCCATTTCTTCCCCTCACCTTTTCCACTTCATCGTTCACCTCTTGTGTCTTTTCATCACAACCTCCAACAATGAAGCTCCTTCCAATGGCGATTCTCTTGCTTTTTGCTCTTTTCGTCGTCTCATCCGCCATGGACATGTCGATCATAGGCTACGACGCCACTCACATGACCAGCTCCGATGCATCCACGGCAAGCTGGCGCACTGACGACGAAGTCAACGCTATGTACGA...

Protein

Download Protein FASTA

494 aa · TkA08G125600|TK1151|PROTEIN

TRHLPHSIINPFLPLTFSTSSFTSCVFSSQPPTMKLLPMAILLLFALFVVSSAMDMSIIGYDATHMTSSDASTASWRTDDEVNAMYESWLVKHGKFYNALERRRGGFRSSKITSGTSKRNSGEHSYKLGLNKFSDLTTEEFRLGYTGAKSIDSKRKSNNVKSDRYSLRSGDVLPDFVDWRTKDAVAAVKDQGSCGSCWAFSTIGAVEGINQITTGDLITLSEQELVDCDTSYNQGCNGGDMDYAFKFIIKNGGIDTDIDY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G125600`
TK1151 ID	TkA08G125600
OH-1004 ID	LXL04_008086
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	70.800
Protein coverage (%)	TK1151 93.320 / OH-1004 99.351 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G125600

Location Chr08:32634442-32636865 (+)

Description Similar to RD21A: Cysteine proteinase RD21A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43060`	Probable thiol protease.	No verified direct reference in this release
`At1g47128`	Cysteine protease that plays a role in immunity, senescence, and biotic and abiotic stresses (Probable).	No verified direct reference in this release
`At3g19390`	Probable thiol protease.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0650000`	Oryzain alpha chain.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008086 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051603 proteolysis involved in protein catabolic process Biological Process

GO:0090333 regulation of stomatal closure Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0000932 P-body Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G47128

ath:AT5G43060

dosa:Os04g0670200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.566

Rank 1 · TkA08G125600 · TK1151

Extracellular0.204

Rank 2 · TkA08G125600 · TK1151

Cytoplasm0.157

Rank 3 · TkA08G125600 · TK1151

Endoplasmic reticulum0.129

Rank 4 · TkA08G125600 · TK1151

Cell membrane0.106

Rank 5 · TkA08G125600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02057Glyco_hydro_5959-98 aa

PF08246Inhibitor_I2986-141 aa

PF00112Peptidase_C1173-388 aa

PF03051Peptidase_C1_2187-205 aa

PF03051Peptidase_C1_2331-367 aa

PF00396Granulin415-425 aa

PF00396Granulin422-468 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G125600	`PF02057`	Glyco_hydro_59	59	98	0.089	12.8
TkA08G125600	`PF08246`	Inhibitor_I29	86	141	5.7e-09	36.9
TkA08G125600	`PF00112`	Peptidase_C1	173	388	3.1e-85	286.4
TkA08G125600	`PF03051`	Peptidase_C1_2	187	205	0.0079	15.8
TkA08G125600	`PF03051`	Peptidase_C1_2	331	367	0.0079	15.8
TkA08G125600	`PF00396`	Granulin	415	425	4.9e-08	33.7
TkA08G125600	`PF00396`	Granulin	422	468	4.9e-08	33.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FMH8`	Arabidopsis thaliana	sp\|Q9FMH8\|RD21B_ARATH Probable cysteine protease RD21B	60.800%	Swiss-Prot	High
`P43297`	Arabidopsis thaliana	sp\|P43297\|RD21A_ARATH Cysteine proteinase RD21A	61.900%	Swiss-Prot	High
`Q9LT78`	Arabidopsis thaliana	sp\|Q9LT78\|RD21C_ARATH Probable cysteine protease RD21C	57.600%	Swiss-Prot	High
`P25776`	Oryza sativa subsp. japonica	sp\|P25776\|ORYA_ORYSJ Oryzain alpha chain	57.500%	Swiss-Prot	High

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