RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G089450
Reference: TK1151 Chr: Chr08 Coordinates: 23153759-23155310 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

351 bp · TkA08G089450|TK1151|cDNA

ATGGATCATGAGGTCCTACGCTTGTTACCGGAATGTAACCACGTGTTTCACCGTGGTTGCATAGATGAGTGGTTGGCTTTACGCGTTACCTGTCCTGTTTGTCGCGCAAGTTTGGTTCCAAAACCCAATAAACTCAGTCTACAGACTGATATGTATTGTGGCCCAAACGGGCCTACTAAAAGTCATGATTCGGTCGAATTGACTCATCCGACATATGACTTTTTTTTTGATAGAAAATTGTCTCGTTCTTATTCAATGGG...

CDS

Download CDS FASTA

351 bp · TkA08G089450|TK1151|CDS

ATGGATCATGAGGTCCTACGCTTGTTACCGGAATGTAACCACGTGTTTCACCGTGGTTGCATAGATGAGTGGTTGGCTTTACGCGTTACCTGTCCTGTTTGTCGCGCAAGTTTGGTTCCAAAACCCAATAAACTCAGTCTACAGACTGATATGTATTGTGGCCCAAACGGGCCTACTAAAAGTCATGATTCGGTCGAATTGACTCATCCGACATATGACTTTTTTTTTGATAGAAAATTGTCTCGTTCTTATTCAATGGG...

Protein

Download Protein FASTA

116 aa · TkA08G089450|TK1151|PROTEIN

MDHEVLRLLPECNHVFHRGCIDEWLALRVTCPVCRASLVPKPNKLSLQTDMYCGPNGPTKSHDSVELTHPTYDFFFDRKLSRSYSMGHLIAERHIKDVDRYTLRLSKEAQKNVETI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G089450
TK1151 IDTkA08G089450
OH-1004 IDLXL04_039123
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)44.200
Protein coverage (%)TK1151 93.966 / OH-1004 37.171
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G089450
LocationChr08:23153759-23155310 (-)
DescriptionSimilar to ATL6: E3 ubiquitin-protein ligase ATL6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g40070 RING-H2 finger protein ATL32. No verified direct reference in this release
At4g09120 Putative RING-H2 finger protein ATL36. No verified direct reference in this release
At2g34990 RING-H2 finger protein ATL38. No verified direct reference in this release
At1g35330 RING-H2 finger protein ATL34. No verified direct reference in this release
At1g22500 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039123 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009416 response to light stimulus Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0033591 response to L-ascorbic acid Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0043562 cellular response to nitrogen levels Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G22500
ath:AT1G72200
ath:AT3G05200
ath:AT5G27420
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.555
Rank 1 · TkA08G089450 · TK1151
Cytoplasm0.410
Rank 2 · TkA08G089450 · TK1151
Cell membrane0.075
Rank 3 · TkA08G089450 · TK1151
Mitochondrion0.056
Rank 4 · TkA08G089450 · TK1151
Endoplasmic reticulum0.047
Rank 5 · TkA08G089450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13639zf-RING_24-35 aa
PF17123zf-RING_114-21 aa
PF13920zf-C3HC4_37-37 aa
PF12678zf-rbx19-35 aa
PF12861zf-ANAPC119-38 aa
PF14634zf-RING_59-35 aa
PF13445zf-RING_UBOX9-32 aa
PF17120zf-RING_169-32 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G089450PF13639zf-RING_24359.3e-1039.3
TkA08G089450PF17123zf-RING_114210.0001522.1
TkA08G089450PF13920zf-C3HC4_37370.01615.7
TkA08G089450PF12678zf-rbx19353e-0937.7
TkA08G089450PF12861zf-ANAPC119384.2e-0524.2
TkA08G089450PF14634zf-RING_59350.0003721.1
TkA08G089450PF13445zf-RING_UBOX9320.0006820.3
TkA08G089450PF17120zf-RING_169320.004117.4
TkA08G089450PF00097zf-C3HC410349e-0626.2
TkA08G089450PF16685zf-RING_1010360.1612.8
TkA08G089450PF11793FANCL_C10260.2512.4
TkA08G089450PF13923zf-C3HC4_211341.5e-0628.6
TkA08G089450PF11789zf-Nse11340.008216.7
TkA08G089450PF23413zf_RING_Vps8_fungal11220.05413.5
TkA08G089450PF23555zf-RING_Vps4111230.07113.5
TkA08G089450PF08746zf-RING-like11340.1313.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W571Arabidopsis thalianasp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL3240.200%Swiss-ProtMedium
Q9M0R5Arabidopsis thalianasp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL3634.700%Swiss-ProtMedium
O64762Arabidopsis thalianasp|O64762|ATL38_ARATH RING-H2 finger protein ATL3835.700%Swiss-ProtMedium
Q9C7I1Arabidopsis thalianasp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL3460.800%Swiss-ProtLow
Q9SK92Arabidopsis thalianasp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL1562.800%Swiss-ProtLow

JBrowse

View in Genome Browser