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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G088540
Reference: TK1151 Chr: Chr08 Coordinates: 22923435-22925372 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1755 bp · TkA08G088540|TK1151|cDNA

TGATTTTTGGTTTCTCAAAGTACGACCTAAAAAATCTGGAATAGGAAGACAGTTTGAAGCTAATTCGCCAATTCCGGCATATGCCAGCGTGGCCCCACACACCACCGCACTGAACTTCTGCCGATTTCATTGTAATCTACCATGGCAATTCGCTCACGTCTCGCCCATCTTCAGCCACTAAGTCCCCGTCAAATGCGCTTCATTAAACTTGCAAAAGAATCTAGTTTAGTGAGGGGCATATCGTCGAACGGCTTATCGGC...

CDS

Download CDS FASTA

1578 bp · TkA08G088540|TK1151|CDS

ATGGCAATTCGCTCACGTCTCGCCCATCTTCAGCCACTAAGTCCCCGTCAAATGCGCTTCATTAAACTTGCAAAAGAATCTAGTTTAGTGAGGGGCATATCGTCGAACGGCTTATCGGCATCTACATTTCGTGATTTGCCACCTTCTAAGGAAAATAACGACATCGACCTCAAAAGCAAGTTACTTTTCTTTACGTATCCTCGACGAAGCGCGACGAGTGTGCTTCAAAAATGGGTCAGCGAAGGCCGAAAAGTCTCCAT...

Protein

Download Protein FASTA

525 aa · TkA08G088540|TK1151|PROTEIN

MAIRSRLAHLQPLSPRQMRFIKLAKESSLVRGISSNGLSASTFRDLPPSKENNDIDLKSKLLFFTYPRRSATSVLQKWVSEGRKVSIYDLRDISRQLVRRGRYKHALQVMKWMEDQNRFQFSESDHALRLESTIKGSTLHEAEDYFAKLPNTAAQKASYLHLLNSYVKEKSTEKAESLMMKMTSLGANVTPHPFNAMMKLYIATSQFDLVLSVISQMKQNNIPRNVLSYNLWMSAIHEVHGVQNVDIVYKEMLNDNNVRV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G088540
TK1151 IDTkA08G088540
OH-1004 IDLXL04_031132
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G088540
LocationChr08:22923435-22925372 (-)
DescriptionSimilar to At5g27460: Pentatricopeptide repeat-containing protein At5g27460
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g27460 Pentatricopeptide repeat-containing protein At5g27460. No verified direct reference in this release
At1g02370 Pentatricopeptide repeat-containing protein At1g02370, mitochondrial. No verified direct reference in this release
At1g02150 Pentatricopeptide repeat-containing protein At1g02150. No verified direct reference in this release
At5g09450 Pentatricopeptide repeat-containing protein At5g09450, mitochondrial. No verified direct reference in this release
At4g01990 Pentatricopeptide repeat-containing protein At4g01990, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031132 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:1902775 mitochondrial large ribosomal subunit assembly Biological Process
GO:1903427 negative regulation of reactive oxygen species biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0140978 mitochondrial large ribosomal subunit binding Molecular Function
KEGG gene cross-reference
ath:AT1G02150
ath:AT1G60770
ath:AT4G02820
ath:AT4G21705
ath:AT5G27460
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.799
Rank 1 · TkA08G088540 · TK1151
Plastid0.121
Rank 2 · TkA08G088540 · TK1151
Nucleus0.058
Rank 3 · TkA08G088540 · TK1151
Cytoplasm0.032
Rank 4 · TkA08G088540 · TK1151
Cell membrane0.010
Rank 5 · TkA08G088540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23276TPR_2471-145 aa
PF13812PPR_373-115 aa
PF10938YfdX90-118 aa
PF13428TPR_1494-111 aa
PF23300HEAT_Nup12094-149 aa
PF13424TPR_1295-109 aa
PF07719TPR_296-109 aa
PF13041PPR_297-117 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G088540PF23276TPR_24711454e-0937.2
TkA08G088540PF13812PPR_3731151.5e-1144.9
TkA08G088540PF10938YfdX901180.1512.8
TkA08G088540PF13428TPR_14941113e-0525.0
TkA08G088540PF23300HEAT_Nup120941490.0613.9
TkA08G088540PF13424TPR_12951090.07513.9
TkA08G088540PF07719TPR_2961090.0003421.2
TkA08G088540PF13041PPR_2971173.5e-1969.4
TkA08G088540PF01535PPR971113.2e-1762.2
TkA08G088540PF12895ANAPC3971130.1812.9
TkA08G088540PF13176TPR_7981100.00318.2
TkA08G088540PF14420Clr51081230.2512.2
TkA08G088540PF29070MSC6_N1402871.2e-1145.1
TkA08G088540PF10602RPN71412190.01116.2
TkA08G088540PF14559TPR_191411630.2412.5
TkA08G088540PF10938YfdX1501830.1512.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3E911Arabidopsis thalianasp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g2746051.600%Swiss-ProtHigh
Q9FZ24Arabidopsis thalianasp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial29.300%Swiss-ProtLow
Q8LPS6Arabidopsis thalianasp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g0215031.000%Swiss-ProtMedium
Q94B59Arabidopsis thalianasp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial32.100%Swiss-ProtMedium
Q93WC5Arabidopsis thalianasp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial27.600%Swiss-ProtLow

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