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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G085150
Reference: TK1151 Chr: Chr08 Coordinates: 21933828-21936172 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1266 bp · TkA08G085150|TK1151|cDNA

ATGAGCACCACTATACACATTTCTAATGGAAATGAAGCTTCTCCTAACAAGGAGAAGCAAAATAAATCATTTTTCATTTCAAATGTTTGGCATTTTATAGGCAAACATCGCGAACAACAACATGCCAAAAAAGTTATTCATTGTATCAAAGTTGGAACCGCCTTGGTTTTAGTTTCACTTCTCTATCTCCTTGATCCTCTTTTTAAGCAAGTTGGAGAAAATGCTATGTGGGCTATCATGACCGTTGTGGTTGTCTATGA...

CDS

Download CDS FASTA

1266 bp · TkA08G085150|TK1151|CDS

ATGAGCACCACTATACACATTTCTAATGGAAATGAAGCTTCTCCTAACAAGGAGAAGCAAAATAAATCATTTTTCATTTCAAATGTTTGGCATTTTATAGGCAAACATCGCGAACAACAACATGCCAAAAAAGTTATTCATTGTATCAAAGTTGGAACCGCCTTGGTTTTAGTTTCACTTCTCTATCTCCTTGATCCTCTTTTTAAGCAAGTTGGAGAAAATGCTATGTGGGCTATCATGACCGTTGTGGTTGTCTATGA...

Protein

Download Protein FASTA

421 aa · TkA08G085150|TK1151|PROTEIN

MSTTIHISNGNEASPNKEKQNKSFFISNVWHFIGKHREQQHAKKVIHCIKVGTALVLVSLLYLLDPLFKQVGENAMWAIMTVVVVYDFYAGATLSKGLLRGIGTILGGGLGYLTAILADEFGKTGNIIIVGTSVFIFGAVATYYRMIPSLKKTYDYGFLIFILTFNLVAVSGLRADKILELARERLTNIGMGFFVCIITSLLIFPMWASDELHNSTSSKFDKLASCIEECMEVYFDASEKDRRKSINVSGCKTILHSKSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G085150
TK1151 IDTkA08G085150
OH-1004 IDLXL04_018829
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.400
Protein coverage (%)TK1151 99.050 / OH-1004 99.761
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G085150
LocationChr08:21933828-21936172 (+)
DescriptionSimilar to ALMT13: Aluminum-activated malate transporter 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g46600 Malate transporter. No verified direct reference in this release
At5g46610 Malate transporter. No verified direct reference in this release
At4g17970 Malate-sensitive anion transporter permeable to chloride, nitrate, sulfate and malate.
Closing plant stomata requires a homolog of an aluminum-activated malate transporter.2010 · DOI: 10.1093/pcp/pcq016
AtALMT12 represents an R-type anion channel required for stomatal movement in Arabidopsis guard cells.2010 · DOI: 10.1111/j.1365-313x.2010.04302.x
At1g08440 Malate transporter. No verified direct reference in this release
At3g11680 Malate transporter. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018829 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010118 stomatal movement Biological Process
GO:0034220 monoatomic ion transmembrane transport Biological Process
GO:1902358 sulfate transmembrane transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009705 plant-type vacuole membrane Cellular Component
GO:0012505 endomembrane system Cellular Component
GO:0008509 monoatomic anion transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G08440
ath:AT4G17970
ath:AT5G46600
ath:AT5G46610
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.821
Rank 1 · TkA08G085150 · TK1151
Endoplasmic reticulum0.123
Rank 2 · TkA08G085150 · TK1151
Cytoplasm0.058
Rank 3 · TkA08G085150 · TK1151
Lysosome / Vacuole0.050
Rank 4 · TkA08G085150 · TK1151
Golgi apparatus0.026
Rank 5 · TkA08G085150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19744DUF623226-94 aa
PF30749DUF872227-89 aa
PF11744ALMT40-358 aa
PF29593DUF857054-75 aa
PF13515FUSC_270-198 aa
PF20040DUF644270-93 aa
PF04632FUSC73-232 aa
PF07690MFS_175-198 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G085150PF19744DUF623226941.410.1
TkA08G085150PF30749DUF872227890.1113.4
TkA08G085150PF11744ALMT403586e-117392.1
TkA08G085150PF29593DUF857054750.1812.4
TkA08G085150PF13515FUSC_2701981.7e-1248.3
TkA08G085150PF20040DUF644270934.68.2
TkA08G085150PF04632FUSC732325.6e-1142.5
TkA08G085150PF07690MFS_1751980.310.7
TkA08G085150PF19744DUF62321121451.410.1
TkA08G085150PF10337ArAE_2_N1512470.03813.8
TkA08G085150PF20040DUF64421511764.68.2
TkA08G085150PF20040DUF64421762114.68.2
TkA08G085150PF23858DUF72201842080.01516.3
TkA08G085150PF20040DUF64422843074.68.2
TkA08G085150PF11744ALMT3714106e-117392.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LS23Arabidopsis thalianasp|Q9LS23|ALMTD_ARATH Aluminum-activated malate transporter 1341.400%Swiss-ProtMedium
Q9LS22Arabidopsis thalianasp|Q9LS22|ALMTE_ARATH Aluminum-activated malate transporter 1442.500%Swiss-ProtMedium
O49696Arabidopsis thalianasp|O49696|ALMTC_ARATH Aluminum-activated malate transporter 1241.800%Swiss-ProtMedium
Q9SJE8Arabidopsis thalianasp|Q9SJE8|ALMT2_ARATH Aluminum-activated malate transporter 238.000%Swiss-ProtMedium
Q9SRM9Arabidopsis thalianasp|Q9SRM9|ALMT8_ARATH Aluminum-activated malate transporter 837.600%Swiss-ProtMedium

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