TkA08G084420 | RubberDandelionOmics

Gene overview

TkA08G084420

Reference: TK1151 Chr: Chr08 Coordinates: 21732450-21739083 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

914 bp · TkA08G084420|TK1151|cDNA

ATACATATAAAACGTGTTGAACAATCTGTGTTTGACGCTTTCGCTCTACTGGCCCATGGCCCAGCTACGCCCATTGGGCCGTCACTCGTTGTTATCCCTAAAACTTATTTAGCTTAAAATCAAAGTTTTATTCAGCGACCAAGTGTACTTCGGCTCCCACGTACGGGCATTCACATGGCAAAACAGCCTTGCTTTTACGATCATTCAACTACTGTTTCCAACCGTGATTACGATCGATTAAACATCGAAGCGTTACTCGA...

CDS

Download CDS FASTA

438 bp · TkA08G084420|TK1151|CDS

ATGGCAAAACAGCCTTGCTTTTACGATCATTCAACTACTGTTTCCAACCGTGATTACGATCGATTAAACATCGAAGCGTTACTCGATTTAATCGACACATCATTCGATCACCTCGTCGATTCTAGGTCTACCGATTCCCACCACGACGATTTTACCGATCGTGCTCTCCACCTCGGATCCGTGATACTCGAAGCTGGCAAGAGATCCGCTCGTAAACAATCCACCGTTCATAATACATCCATCTGGCCTCTCACTATTGA...

Protein

Download Protein FASTA

145 aa · TkA08G084420|TK1151|PROTEIN

MAKQPCFYDHSTTVSNRDYDRLNIEALLDLIDTSFDHLVDSRSTDSHHDDFTDRALHLGSVILEAGKRSARKQSTVHNTSIWPLTIDLTVKVFSMLDTRSTCIAAATCLFFSSVLKILRVILTSTWLVYPTRSFSPNSIVMWHLQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G084420`
TK1151 ID	TkA08G084420
OH-1004 ID	LXL04_018822
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.800
Protein coverage (%)	TK1151 80.000 / OH-1004 46.964 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G084420

Location Chr08:21732450-21739083 (-)

Description Similar to SKIP17: F-box protein SKIP17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02760`	F-box protein At4g02760.	No verified direct reference in this release
`At4g02733`	F-box protein At4g02733.	No verified direct reference in this release
`At4g02740`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018822 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0019005 SCF ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT4G02733

ath:AT4G02740

ath:AT4G02760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.686

Rank 1 · TkA08G084420 · TK1151

Cytoplasm0.256

Rank 2 · TkA08G084420 · TK1151

Cell membrane0.058

Rank 3 · TkA08G084420 · TK1151

Endoplasmic reticulum0.053

Rank 4 · TkA08G084420 · TK1151

Mitochondrion0.051

Rank 5 · TkA08G084420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like87-113 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G084420	`PF12937`	F-box-like	87	113	0.14	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SY03`	Arabidopsis thaliana	sp\|Q9SY03\|FB219_ARATH F-box protein At4g02760	42.200%	Swiss-Prot	Medium
`Q2V3L6`	Arabidopsis thaliana	sp\|Q2V3L6\|FB343_ARATH F-box protein At4g02733	38.800%	Swiss-Prot	Medium
`Q0WRC9`	Arabidopsis thaliana	sp\|Q0WRC9\|SKI17_ARATH F-box protein SKIP17	47.400%	Swiss-Prot	Low

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