LXL04_018822 | RubberDandelionOmics

Gene overview

LXL04_018822

Reference: OH-1004 Chr: Chr04 Coordinates: 18662260-18664700 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

750 bp · LXL04_018822|LXL04_018822|OH1004|cDNA

ATGGAAGCAAAGTGCTTGAAATGGTTGTTTGATGAGCACGGTGGGAAAATGTTTATCCATCAAACCTCTACATTTGCCAAGGTAAAGCCTCTGATTGCATACACTAATGAGCTTTTTGCAGGTGGTTGTTGTAAAGTTGCAAACGCAAGGAATAACCCTACAAACATTGCACAAGTAGACGTCAAAAAGAAGAGAGGAAAAAGTGCAAAAACTAGGATTGACTATGGACCAGTTGGAACACCATTAATAAATCGGCTCCC...

CDS

Download CDS FASTA

744 bp · LXL04_018822|LXL04_018822|OH1004|CDS

ATGGAAGCAAAGTGCTTGAAATGGTTGTTTGATGAGCACGGTGGGAAAATGTTTATCCATCAAACCTCTACATTTGCCAAGGTAAAGCCTCTGATTGCATACACTAATGAGCTTTTTGCAGGTGGTTGTTGTAAAGTTGCAAACGCAAGGAATAACCCTACAAACATTGCACAAGTAGACGTCAAAAAGAAGAGAGGAAAAAGTGCAAAAACTAGGATTGACTATGGACCAGTTGGAACACCATTAATAAATCGGCTCCC...

Protein

Download Protein FASTA

247 aa · LXL04_018822|LXL04_018822|OH1004|PROTEIN

MEAKCLKWLFDEHGGKMFIHQTSTFAKVKPLIAYTNELFAGGCCKVANARNNPTNIAQVDVKKKRGKSAKTRIDYGPVGTPLINRLPRTDFHMAKQPCFYDHSTTVSNRDYDRLNIDALLDLIDTSFDHLVDSRSTDSHHDDFTDRALHLGSVILEAGKRSARKQSTVHNTSIWPLTIDLTVKVFSMLNTRSTCIAAATCLFFQQCAKDPSCYTNIDLACVPHKIILSKFNSDVASSVIERSGNALQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018822`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018822

Location Chr04:18662260-18664700 (-)

Description Similar to SKIP17: F-box protein SKIP17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02740`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At4g02760`	F-box protein At4g02760.	No verified direct reference in this release
`At4g02733`	F-box protein At4g02733.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018822 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0019005 SCF ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT4G02733

ath:AT4G02740

ath:AT4G02760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.658

Rank 1 · LXL04_018822 · OH-1004

Cytoplasm0.234

Rank 2 · LXL04_018822 · OH-1004

Cell membrane0.068

Rank 3 · LXL04_018822 · OH-1004

Endoplasmic reticulum0.050

Rank 4 · LXL04_018822 · OH-1004

Plastid0.049

Rank 5 · LXL04_018822 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WRC9`	Arabidopsis thaliana	F-box protein SKIP17	37.692%	Swiss-Prot	moderate database homology
`Q9SY03`	Arabidopsis thaliana	F-box protein At4g02760	32.609%	Swiss-Prot	moderate database homology
`Q2V3L6`	Arabidopsis thaliana	F-box protein At4g02733	38.400%	Swiss-Prot	moderate database homology

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