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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G077970
Reference: TK1151 Chr: Chr08 Coordinates: 19997731-20001466 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2009 bp · TkA08G077970|TK1151|cDNA

CCCCCATACTTCAAAAACCCTAATCCCCTACCTTAAGCCCCTCTGCAACTTCCAAACATCGACCAACACCACAATGGGGAAACAAAGCAAAAAGAGCAAGAACAAGAGAGTCACACTGAAGGCTAAAAACAAGGTGCTAAAGAAGGTAAAGCTACACGTCAAGAAGAAAGCGAAAGCGGCAAAGAAGCTGGGCCTGCACAAAAAACCTAAAGTTAACAAACATGCTGAAGATGATTCACCTTTAAACGAAGAAGAAATCA...

CDS

Download CDS FASTA

1767 bp · TkA08G077970|TK1151|CDS

ATGGGGAAACAAAGCAAAAAGAGCAAGAACAAGAGAGTCACACTGAAGGCTAAAAACAAGGTGCTAAAGAAGGTAAAGCTACACGTCAAGAAGAAAGCGAAAGCGGCAAAGAAGCTGGGCCTGCACAAAAAACCTAAAGTTAACAAACATGCTGAAGATGATTCACCTTTAAACGAAGAAGAAATCAAGGCTCTTGAGGCCCGTAAAGCTGCCAAATCTCTCAATAAAACCGAGCAAAAAAATCCTGCTGCAACCCAAGA...

Protein

Download Protein FASTA

588 aa · TkA08G077970|TK1151|PROTEIN

MGKQSKKSKNKRVTLKAKNKVLKKVKLHVKKKAKAAKKLGLHKKPKVNKHAEDDSPLNEEEIKALEARKAAKSLNKTEQKNPAATQERVIKRKFAQLDEDDDDITNQPEVRDEFTVPSKIRDNSERTFYKELAKVIEASDVILEVLDARDPLGTRAADMEKMVMRAGPEKHLVLLLNKIDLVPREAAEKWLKYLREELPAVAFKCSTQEQRSNLGWKSSKNAKKTSNILQTSDCLGAETLIKLLKNYSRSHEIKRSITVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G077970
TK1151 IDTkA08G077970
OH-1004 IDLXL04_000854
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)68.600
Protein coverage (%)TK1151 80.612 / OH-1004 82.143
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G077970
LocationChr08:19997731-20001466 (+)
DescriptionSimilar to NSN1: Guanine nucleotide-binding protein-like NSN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g07050 Involved in the differentiation of epidermal cells, probably via the regulation of the expression of meristem-related genes (e.g. CLV3, STM, KNAT1, CUC2 and AG) and of leaf polarity-related genes (e.g. YAB5, FIL, AS2, PHB and PHV).
Nucleostemin-like 1 is required for embryogenesis and leaf development in Arabidopsis.2012 · DOI: 10.1007/s11103-011-9840-7
A nucleostemin-like GTPase required for normal apical and floral meristem development in Arabidopsis.2012 · DOI: 10.1091/mbc.e11-09-0797
The nucleolar GTPase nucleostemin-like 1 plays a role in plant growth and senescence by modulating ribosome biogenesis.2015 · DOI: 10.1093/jxb/erv337

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000854 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007281 germ cell development Biological Process
GO:0010077 maintenance of inflorescence meristem identity Biological Process
GO:0031334 positive regulation of protein-containing complex assembly Biological Process
GO:0031397 negative regulation of protein ubiquitination Biological Process
GO:0031647 regulation of protein stability Biological Process
GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process
GO:0033234 negative regulation of protein sumoylation Biological Process
GO:0040014 regulation of multicellular organism growth Biological Process
GO:0042127 regulation of cell population proliferation Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0042273 ribosomal large subunit biogenesis Biological Process
GO:0042659 regulation of cell fate specification Biological Process
KEGG gene cross-reference
ath:AT3G07050
cel:CELE_K01C8.9
ddi:DDB_G0287147
dme:Dmel_CG3983
hsa:54552
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.904
Rank 1 · TkA08G077970 · TK1151
Cytoplasm0.137
Rank 2 · TkA08G077970 · TK1151
Mitochondrion0.025
Rank 3 · TkA08G077970 · TK1151
Cell membrane0.023
Rank 4 · TkA08G077970 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA08G077970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19993DO-GTPase237-72 aa
PF13238AAA_18104-170 aa
PF00350Dynamin_N121-168 aa
PF01926MMR_HSR1124-178 aa
PF00009GTP_EFTU127-226 aa
PF02492cobW136-194 aa
PF02421FeoB_N137-209 aa
PF00025Arf145-186 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G077970PF19993DO-GTPase237720.03714.4
TkA08G077970PF13238AAA_181041700.2512.6
TkA08G077970PF00350Dynamin_N1211686.3e-0523.8
TkA08G077970PF01926MMR_HSR11241787.3e-1968.7
TkA08G077970PF00009GTP_EFTU1272260.0008319.7
TkA08G077970PF02492cobW1361940.08413.2
TkA08G077970PF02421FeoB_N1372098.9e-1142.3
TkA08G077970PF00025Arf1451860.02314.9
TkA08G077970PF19993DO-GTPase21482200.03714.4
TkA08G077970PF13191AAA_161531850.02615.8
TkA08G077970PF03193RsgA_GTPase1702461.8e-0525.4
TkA08G077970PF13191AAA_162382870.02615.8
TkA08G077970PF00025Arf2503040.02314.9
TkA08G077970PF03193RsgA_GTPase2513121.8e-0525.4
TkA08G077970PF00009GTP_EFTU2542780.0008319.7
TkA08G077970PF01926MMR_HSR12583307.3e-1968.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M8Z5Arabidopsis thalianasp|Q9M8Z5|NSN1_ARATH Guanine nucleotide-binding protein-like NSN163.500%Swiss-ProtHigh

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