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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G063610
Reference: TK1151 Chr: Chr08 Coordinates: 16261096-16266889 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4391 bp · TkA08G063610|TK1151|cDNA

CGTAACTTCACCTTTCTTCTTCTTCCTCAAACATATTTTCATTTCCCGCTCCTGTATAGCCTTTCAAAATCTCCTTTTTTCAAATCAAGCACACACAGACATCTCATTTCTCTCTTCACTGGACTCACCACATGGCTACGCCGTTCGTGTTTCCGCAAAACCTAATCGCCCTTGAAGAAGACTCCGGCGACGACGCCGGTCATCTATCCGTACAAAATCTCACCTCAATTTCATCTCTCCGGGCTTCAGATCTCGAAGAA...

CDS

Download CDS FASTA

4032 bp · TkA08G063610|TK1151|CDS

ATGGCTACGCCGTTCGTGTTTCCGCAAAACCTAATCGCCCTTGAAGAAGACTCCGGCGACGACGCCGGTCATCTATCCGTACAAAATCTCACCTCAATTTCATCTCTCCGGGCTTCAGATCTCGAAGAATTCGTCAAAGGCGTGTCATTTGATTTGTCCGACAAAGAGCTGTTTTGTGTCGAAGAACAAGAAATATTCGACCGGATTTACTCATTGGTTAAGTGTTTTGGTAACCTAACTCCTGGTTGTAAGCTGAATAT...

Protein

Download Protein FASTA

1343 aa · TkA08G063610|TK1151|PROTEIN

MATPFVFPQNLIALEEDSGDDAGHLSVQNLTSISSLRASDLEEFVKGVSFDLSDKELFCVEEQEIFDRIYSLVKCFGNLTPGCKLNIVESLRSNFSVLLPNIDSLFRAPASPTSEVRESDDGGRIFERISSHRNAFKIYTFFLIHVVLAQESTSASSNTTKVPPSNRKKQLSNSWNWEAQRGRILNLIANSLEINLSSLFGSSDPDENYLSFLVRNTLSMFENPTLLKDSDTKEALCRIIGTCATKYHYLAQSCASILHI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G063610
TK1151 IDTkA08G063610
OH-1004 IDLXL04_018482
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 38.561
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G063610
LocationChr08:16261096-16266889 (-)
DescriptionSimilar to TY3B-I: Transposon Ty3-I Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g57060 Essential protein.
The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility.2013 · DOI: 10.1007/s00412-013-0424-y
The condensin complexes play distinct roles to ensure normal chromosome morphogenesis during meiotic division in Arabidopsis.2014 · DOI: 10.1111/tpj.12628

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018482 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000278 mitotic cell cycle Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006325 chromatin organization Biological Process
GO:0006508 proteolysis Biological Process
GO:0007076 mitotic chromosome condensation Biological Process
GO:0010032 meiotic chromosome condensation Biological Process
GO:0015074 DNA integration Biological Process
GO:0051301 cell division Biological Process
GO:0075523 viral translational frameshifting Biological Process
GO:0000779 condensed chromosome, centromeric region Cellular Component
GO:0000796 condensin complex Cellular Component
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT3G57060
sce:YGR109W-B
sce:YIL082W-A
spo:2542672
spo:2542797
spo:2543673
spo:3361218
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.874
Rank 1 · TkA08G063610 · TK1151
Cytoplasm0.203
Rank 2 · TkA08G063610 · TK1151
Cell membrane0.022
Rank 3 · TkA08G063610 · TK1151
Golgi apparatus0.019
Rank 4 · TkA08G063610 · TK1151
Mitochondrion0.018
Rank 5 · TkA08G063610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12922Cnd1_N83-251 aa
PF01602Adaptin_N228-259 aa
PF13646HEAT_2231-270 aa
PF12719Cnd3301-323 aa
PF25786HEAT_GCN1_C309-361 aa
PF20168PDS5311-447 aa
PF25786HEAT_GCN1_C342-441 aa
PF10363RTP1_C1359-413 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G063610PF12922Cnd1_N832512.8e-35122.3
TkA08G063610PF01602Adaptin_N2282590.0008118.8
TkA08G063610PF13646HEAT_22312700.4611.5
TkA08G063610PF12719Cnd33013230.0007119.6
TkA08G063610PF25786HEAT_GCN1_C3093610.5411.0
TkA08G063610PF20168PDS53114475.2e-0831.9
TkA08G063610PF25786HEAT_GCN1_C3424410.5411.0
TkA08G063610PF10363RTP1_C13594130.1113.3
TkA08G063610PF12765Cohesin_HEAT3773950.0009720.2
TkA08G063610PF13646HEAT_23824010.4611.5
TkA08G063610PF02985HEAT3834103.7e-0627.4
TkA08G063610PF01602Adaptin_N3884520.0008118.8
TkA08G063610PF12765Cohesin_HEAT4274450.0009720.2
TkA08G063610PF22928INTS1_R44274720.005417.4
TkA08G063610PF12717Cnd14294541.1e-52179.1
TkA08G063610PF02985HEAT4294513.7e-0627.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A0A1I9LM04Arabidopsis thalianasp|A0A1I9LM04|CNDD2_ARATH Condensin-1 complex subunit CAP-D268.000%Swiss-ProtHigh

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