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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G057270
Reference: TK1151 Chr: Chr08 Coordinates: 14649782-14651074 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1083 bp · TkA08G057270|TK1151|cDNA

ATGTACGCAAAATGTGGCGTCATAGACGATGCAAGGAAGCTGTTCGATATAATGCCAGAGAAAGACCTTACAACATGGACTGTCATGATCGACATGTATGCAAAATGCGGAAGCATAGAAACCGCACGCCAGGTGTTCGATGAAATGCCACAAAGAAACGTTATAACATGGAGCACAATGATTTCAGCTTACGGGTACCACGGACAAGCCCAAAAAGCTCTCGAAATATTCCACATCATGTCCAAAAACAAAATCACTCC...

CDS

Download CDS FASTA

1083 bp · TkA08G057270|TK1151|CDS

ATGTACGCAAAATGTGGCGTCATAGACGATGCAAGGAAGCTGTTCGATATAATGCCAGAGAAAGACCTTACAACATGGACTGTCATGATCGACATGTATGCAAAATGCGGAAGCATAGAAACCGCACGCCAGGTGTTCGATGAAATGCCACAAAGAAACGTTATAACATGGAGCACAATGATTTCAGCTTACGGGTACCACGGACAAGCCCAAAAAGCTCTCGAAATATTCCACATCATGTCCAAAAACAAAATCACTCC...

Protein

Download Protein FASTA

360 aa · TkA08G057270|TK1151|PROTEIN

MYAKCGVIDDARKLFDIMPEKDLTTWTVMIDMYAKCGSIETARQVFDEMPQRNVITWSTMISAYGYHGQAQKALEIFHIMSKNKITPNKITFLSLLYACSHSGLVNEALQIFSLMQNQYLIKPDVKHYTCMVDLLGRAGRLDQAFTMIKNMNVEKDEGLWSSFLASCRIYNQVEMAQKAAGSLLEINPQNPSHYIMLSNIYAKAGKWDDVAKIRVQMNNINVKKTPGWTWVEAHNTFHRFSSGDRTHCESNAIYEKLEGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G057270
TK1151 IDTkA08G057270
OH-1004 IDLXL04_018363
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)69.100
Protein coverage (%)TK1151 91.111 / OH-1004 62.736
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G057270
LocationChr08:14649782-14651074 (+)
DescriptionSimilar to PCMP-H44: Pentatricopeptide repeat-containing protein At2g03880, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g16835 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial. No verified direct reference in this release
At1g20230 Pentatricopeptide repeat-containing protein At1g20230. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At3g49170 May play a role in embryogenesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018363 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G03880
ath:AT3G12770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.534
Rank 1 · TkA08G057270 · TK1151
Plastid0.302
Rank 2 · TkA08G057270 · TK1151
Nucleus0.074
Rank 3 · TkA08G057270 · TK1151
Cytoplasm0.056
Rank 4 · TkA08G057270 · TK1151
Peroxisome0.013
Rank 5 · TkA08G057270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR2-22 aa
PF13041PPR_22-22 aa
PF12854PPR_12-18 aa
PF13428TPR_142-16 aa
PF14559TPR_194-22 aa
PF01335DED6-23 aa
PF20431E_motif20-51 aa
PF13041PPR_222-54 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G057270PF01535PPR2222.1e-34116.1
TkA08G057270PF13041PPR_22225.5e-2897.5
TkA08G057270PF12854PPR_12184.4e-2691.0
TkA08G057270PF13428TPR_142160.0003321.8
TkA08G057270PF14559TPR_194220.001219.9
TkA08G057270PF01335DED6230.008417.0
TkA08G057270PF20431E_motif20512e-2589.5
TkA08G057270PF13041PPR_222545.5e-2897.5
TkA08G057270PF12854PPR_122494.4e-2691.0
TkA08G057270PF13812PPR_322521.2e-1351.6
TkA08G057270PF17177PPR_long241031.8e-0834.7
TkA08G057270PF29070MSC6_N24532.3e-0834.3
TkA08G057270PF01535PPR25542.1e-34116.1
TkA08G057270PF13428TPR_1425490.0003321.8
TkA08G057270PF14559TPR_1925520.001219.9
TkA08G057270PF23276TPR_2427541.7e-1144.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M4P3Arabidopsis thalianasp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial38.600%Swiss-ProtMedium
Q9LNU6Arabidopsis thalianasp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g2023035.800%Swiss-ProtMedium
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317038.100%Swiss-ProtMedium
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275037.800%Swiss-ProtMedium
Q5G1T1Arabidopsis thalianasp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic37.600%Swiss-ProtMedium

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