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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_018363
Reference: OH-1004 Chr: Chr04 Coordinates: 12113411-12115783 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1911 bp · LXL04_018363|LXL04_018363|OH1004|cDNA

ATGTTCACACTCAAAAATCAAAGGTTGTTGATCGCTGTTACATCTATTGAAAGCCAAAAGCTCTGCTCTGTTGCTTCTGCCTTACAGATTCTAGATGATGGGCAAGCAAACCGTCAATTCCATGAGCAGAACACCTCACTTCTCACCAACCAAATTCAAGAAACAACATCTTTGGACCCTAGATTCTACGTTTCCGCCCTAATAAACTGTAAACACCTGCAACAGATTAAATCCCTTCACGCTCAGTTATCTGTTGCTGG...

CDS

Download CDS FASTA

1911 bp · LXL04_018363|LXL04_018363|OH1004|CDS

ATGTTCACACTCAAAAATCAAAGGTTGTTGATCGCTGTTACATCTATTGAAAGCCAAAAGCTCTGCTCTGTTGCTTCTGCCTTACAGATTCTAGATGATGGGCAAGCAAACCGTCAATTCCATGAGCAGAACACCTCACTTCTCACCAACCAAATTCAAGAAACAACATCTTTGGACCCTAGATTCTACGTTTCCGCCCTAATAAACTGTAAACACCTGCAACAGATTAAATCCCTTCACGCTCAGTTATCTGTTGCTGG...

Protein

Download Protein FASTA

636 aa · LXL04_018363|LXL04_018363|OH1004|PROTEIN

MFTLKNQRLLIAVTSIESQKLCSVASALQILDDGQANRQFHEQNTSLLTNQIQETTSLDPRFYVSALINCKHLQQIKSLHAQLSVAGLLNDLLLINKLLYMYVRYNALDDANSLFDEMPARNQISWSVMIGGFAKASNHTNCFETFREYIRSGEQLDVYTLPSVIRVCRDIKDLKMGKLVHHIAHKFGLHMNTFVCVALVDMYAKCGVIDDARKLFDIMPEKDLTTWTVMIGACAANGNASESLVLFDHMRESGLLPDKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_018363
TK1151 IDTkA08G057270
OH-1004 IDLXL04_018363
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)69.100
Protein coverage (%)TK1151 91.111 / OH-1004 62.736
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_018363
LocationChr04:12113411-12115783 (+)
DescriptionSimilar to PCMP-H44: Pentatricopeptide repeat-containing protein At2g03880, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12770 Pentatricopeptide repeat-containing protein At3g12770. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At3g13770 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial. No verified direct reference in this release
At2g41080 Pentatricopeptide repeat-containing protein At2g41080. No verified direct reference in this release
At2g33760 Pentatricopeptide repeat-containing protein At2g33760. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018363 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G03880
ath:AT3G12770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.696
Rank 1 · LXL04_018363 · OH-1004
Plastid0.191
Rank 2 · LXL04_018363 · OH-1004
Nucleus0.046
Rank 3 · LXL04_018363 · OH-1004
Cytoplasm0.040
Rank 4 · LXL04_018363 · OH-1004
Cell membrane0.007
Rank 5 · LXL04_018363 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2223-271 aa
PF01535.27PPR226-255 aa
PF17177.11PPR_long228-374 aa
PF01535.27PPR298-325 aa
PF13812.13PPR_3322-370 aa
PF13041.13PPR_2323-371 aa
PF01535.27PPR326-355 aa
PF29070.1MSC6_N327-420 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_018363PF13041.13PPR_22232714.6e-43145.8
LXL04_018363PF01535.27PPR2262553.2e-49162.5
LXL04_018363PF17177.11PPR_long2283741.1e-0938.8
LXL04_018363PF01535.27PPR2983253.2e-49162.5
LXL04_018363PF13812.13PPR_33223701.1e-1764.6
LXL04_018363PF13041.13PPR_23233714.6e-43145.8
LXL04_018363PF01535.27PPR3263553.2e-49162.5
LXL04_018363PF29070.1MSC6_N3274207e-1039.3
LXL04_018363PF23276.3TPR_243374263e-1660.3
LXL04_018363PF17177.11PPR_long3404261.1e-0938.8
LXL04_018363PF12854.14PPR_13924225.4e-29100.3
LXL04_018363PF20431.5E_motif4415039.2e-2587.4
LXL04_018363PF14432.13DYW_deaminase5396002.9e-1659.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LTV8Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g1277036.077%Swiss-Protmoderate database homology
Q9SI53Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g03880, mitochondrial39.258%Swiss-Protmoderate database homology
Q9LIC3Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At3g13770, mitochondrial35.926%Swiss-Protmoderate database homology
Q8S9M4Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g4108035.690%Swiss-Protmoderate database homology
P93011Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g3376037.428%Swiss-Protmoderate database homology

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