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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G047820
Reference: TK1151 Chr: Chr08 Coordinates: 12147927-12149722 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1246 bp · TkA08G047820|TK1151|cDNA

TCTCAAAGGGCATTTCCGACATTTCCTTTTCAAGACGCACCCCCAATTCCTGGCCACAAAAAGATCTCCAACTTGCCGTTCACAAGTCACAACCTCATGATACTTTCGCTTCTCACCGTATCAACGCCACACGCACACGCTACTATTCCGCCGGAGAGAACTGTCGTCAGACATTAATTCAACTTCATGGCCGCCGGAACGAGCGCCAACGTGCCGACGCCTCACTTAATTGGCTCCACTGCCGTCGAGCTTTCCAGAAA...

CDS

Download CDS FASTA

918 bp · TkA08G047820|TK1151|CDS

ATGGCCGCCGGAACGAGCGCCAACGTGCCGACGCCTCACTTAATTGGCTCCACTGCCGTCGAGCTTTCCAGAAACAACCGTACCTTAGCGCCATCGCAACTGGTTCGTATTTCCTGTAAGAACAGCAGCAACAATGGACTTTCGATTCGAAGCAGCCACGACCGTCAATCTTCATCCAAAGGCTTACTCGAAGGACCTTCGTGCTTATTCGTTGGTCCGATCGAAAGCGCCAGCCAGGAAACCCTAGAAGCTCTCTATCG...

Protein

Download Protein FASTA

305 aa · TkA08G047820|TK1151|PROTEIN

MAAGTSANVPTPHLIGSTAVELSRNNRTLAPSQLVRISCKNSSNNGLSIRSSHDRQSSSKGLLEGPSCLFVGPIESASQETLEALYRQARDAYYSGKPLILDDMFDRVELKLRWYGSKYVVKYPRCSLRQQSTYADAEEDPAQVFALASVWLLFLGFGSSACLVPVVYTVGQAFKDAINSGLSTSNQAPFLELLAMTNGMLVMLLGSMIGYPVASAAVGALKGLWKNDLVAIKGACPNCGEEVFSFVKSNQFSNSPHKAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G047820
TK1151 IDTkA08G047820
OH-1004 IDLXL04_017823
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G047820
LocationChr08:12147927-12149722 (+)
DescriptionSimilar to PGRL1B: PGR5-like protein 1B, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017823 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009773 photosynthetic electron transport in photosystem I Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009579 thylakoid Cellular Component
GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors Molecular Function
GO:0019904 protein domain specific binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT4G11960
ath:AT4G22890
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.966
Rank 1 · TkA08G047820 · TK1151
Nucleus0.037
Rank 2 · TkA08G047820 · TK1151
Mitochondrion0.030
Rank 3 · TkA08G047820 · TK1151
Cytoplasm0.022
Rank 4 · TkA08G047820 · TK1151
Cell membrane0.016
Rank 5 · TkA08G047820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18930DUF567921-29 aa
PF30905PGRL1_N82-121 aa
PF12760Zn_ribbon_IS1595113-136 aa
PF10601zf-LITAF-like126-176 aa
PF30904PGRL1_C162-175 aa
PF30904PGRL1_C205-273 aa
PF20120DUF6510215-267 aa
PF12760Zn_ribbon_IS1595225-264 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G047820PF18930DUF567921290.1812.7
TkA08G047820PF30905PGRL1_N821210.0005421.0
TkA08G047820PF12760Zn_ribbon_IS15951131360.09513.4
TkA08G047820PF10601zf-LITAF-like1261760.04614.6
TkA08G047820PF30904PGRL1_C1621756.4e-0523.8
TkA08G047820PF30904PGRL1_C2052736.4e-0523.8
TkA08G047820PF20120DUF65102152670.1912.4
TkA08G047820PF12760Zn_ribbon_IS15952252640.09513.4
TkA08G047820PF21202SLX1_C2262430.2312.5
TkA08G047820PF09845OapC2292590.04614.7
TkA08G047820PF18930DUF56792302460.1812.7
TkA08G047820PF25207DUF78372342453.98.2
TkA08G047820PF14255Zn_ribbon_212362750.01416.0
TkA08G047820PF10601zf-LITAF-like2362490.04614.6
TkA08G047820PF21202SLX1_C2462690.2312.5
TkA08G047820PF10601zf-LITAF-like2562680.04614.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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