RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G041370
Reference: TK1151 Chr: Chr08 Coordinates: 10540703-10542233 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1092 bp · TkA08G041370|TK1151|cDNA

ATGACAAAGTTGGCTTACTTGAATGAACCAGGAGTGCTTGACTATATTAAGAAACGTTATGCTCTTAATGAGATATATACATACATAGGAAGCATCCTAATTGCTGTGAACCCATTCACAAAGCTTCCTCATCTTCACAATGTCCATATGATGGAGCAATACAATGGAGCTCCATTCGGTGAACTAAACCCCCATGTATTTGCTATTGCAGACGCATCTTACAGGGCAATGATAAATGAGGGAAAAAGCCAGTCGATATT...

CDS

Download CDS FASTA

1092 bp · TkA08G041370|TK1151|CDS

ATGACAAAGTTGGCTTACTTGAATGAACCAGGAGTGCTTGACTATATTAAGAAACGTTATGCTCTTAATGAGATATATACATACATAGGAAGCATCCTAATTGCTGTGAACCCATTCACAAAGCTTCCTCATCTTCACAATGTCCATATGATGGAGCAATACAATGGAGCTCCATTCGGTGAACTAAACCCCCATGTATTTGCTATTGCAGACGCATCTTACAGGGCAATGATAAATGAGGGAAAAAGCCAGTCGATATT...

Protein

Download Protein FASTA

363 aa · TkA08G041370|TK1151|PROTEIN

MTKLAYLNEPGVLDYIKKRYALNEIYTYIGSILIAVNPFTKLPHLHNVHMMEQYNGAPFGELNPHVFAIADASYRAMINEGKSQSILVSGESGAGKTETTKLIMQYLTYVGRCPVTVTDDATVEQRLLESNPLLEAFGNAHTLRNDNSSRFGKFVEIQFDSNCRISGAAIRTYLLERSRVVQTTDSERNYHCFYQLCASGRDADVYKLGHPTNFHYLNQSSVYEWDGESSAEEYMKTRRAMDVFGISCEEQEAIFRTLAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G041370
TK1151 IDTkA08G041370
OH-1004 IDLXL04_017906
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.100
Protein coverage (%)TK1151 96.143 / OH-1004 23.953
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G041370
LocationChr08:10540703-10542233 (+)
DescriptionSimilar to XI-I: Myosin-15
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g33200 Myosin heavy chain that is required for the cell cycle- regulated transport of various organelles and proteins for their segregation.
Myosin XI-i links the nuclear membrane to the cytoskeleton to control nuclear movement and shape in Arabidopsis.2013 · DOI: 10.1016/j.cub.2013.07.035
At1g08730 Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. No verified direct reference in this release
At1g54560 Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. No verified direct reference in this release
At5g20490 Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017906 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007015 actin filament organization Biological Process
GO:0007097 nuclear migration Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0010090 trichome morphogenesis Biological Process
GO:0010091 trichome branching Biological Process
GO:0010154 fruit development Biological Process
GO:0030048 actin filament-based movement Biological Process
GO:0048467 gynoecium development Biological Process
GO:0048767 root hair elongation Biological Process
GO:0048768 root hair cell tip growth Biological Process
KEGG gene cross-reference
ath:AT1G08730
ath:AT1G54560
ath:AT4G33200
ath:AT5G20490
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.737
Rank 1 · TkA08G041370 · TK1151
Nucleus0.246
Rank 2 · TkA08G041370 · TK1151
Cell membrane0.084
Rank 3 · TkA08G041370 · TK1151
Mitochondrion0.051
Rank 4 · TkA08G041370 · TK1151
Peroxisome0.049
Rank 5 · TkA08G041370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00063Myosin_head1-349 aa
PF24883NPHP3_N71-108 aa
PF13191AAA_1678-116 aa
PF13245AAA_1978-111 aa
PF06414Zeta_toxin81-120 aa
PF00158Sigma54_activat82-131 aa
PF20720nSTAND382-122 aa
PF02367TsaE82-109 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G041370PF00063Myosin_head13492.8e-126423.2
TkA08G041370PF24883NPHP3_N711080.2112.5
TkA08G041370PF13191AAA_16781160.002918.9
TkA08G041370PF13245AAA_19781110.05214.4
TkA08G041370PF06414Zeta_toxin811208.5e-0522.8
TkA08G041370PF00158Sigma54_activat821310.02115.2
TkA08G041370PF20720nSTAND3821220.05213.9
TkA08G041370PF02367TsaE821090.0713.8
TkA08G041370PF13401AAA_22831180.0216.0
TkA08G041370PF01583APS_kinase831910.07113.9
TkA08G041370PF00437T2SSE831220.08612.2
TkA08G041370PF06414Zeta_toxin1782098.5e-0522.8
TkA08G041370PF02367TsaE2032220.0713.8
TkA08G041370PF06414Zeta_toxin2302938.5e-0522.8
TkA08G041370PF06414Zeta_toxin2903208.5e-0522.8
TkA08G041370PF13191AAA_162953210.002918.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WPU1Arabidopsis thalianasp|Q0WPU1|MYO15_ARATH Myosin-1575.400%Swiss-ProtHigh
F4HXP9Arabidopsis thalianasp|F4HXP9|MYO9_ARATH Myosin-966.300%Swiss-ProtHigh
F4HWY6Arabidopsis thalianasp|F4HWY6|MYO11_ARATH Myosin-1166.300%Swiss-ProtHigh
F4K5J1Arabidopsis thalianasp|F4K5J1|MYO17_ARATH Myosin-1765.000%Swiss-ProtHigh

JBrowse

View in Genome Browser