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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G035960
Reference: TK1151 Chr: Chr08 Coordinates: 9172257-9173965 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1498 bp · TkA08G035960|TK1151|cDNA

ACACAAAGTCAATAATCTTTCTCTTTCAATCAAGACTATAATTTTTAAATTTCCCACACAATCCCTCTCATTGAATTCACACCCAAGATCGGGTGTGTTCAATCACGGAATTTGGTGTACTATAACTAGATATTATATATAGATACGTACAGAATATCTATATATCTATAGGTTGAAAGAGATAAAGATTGGAAATTCATAAACAAAAAAAAAATATTACTATATATAAAAAGATGATGACGACGATGATGATGAAGGTT...

CDS

Download CDS FASTA

1098 bp · TkA08G035960|TK1151|CDS

ATGATGACGACGATGATGATGAAGGTTGATTATTCAAAGTCCAGAAGAAAACATTTTGGAAACCCCCATATAAGGCTTCCTTCTTCTTCTTCCTCTTCATCTTCATCATCCTCCCAAAACACCATTATGGTTGCGGAATCAACGGATATGCAGGAGGTTGTGGATTTGAGTGCCATGTCTTTAGACATCCTCCCTATCAGTCCCTCTTTTAATTTAGCCACCATTCGTGTCTTAGATATCTCCAACAATAATCTCCAGGT...

Protein

Download Protein FASTA

365 aa · TkA08G035960|TK1151|PROTEIN

MMTTMMMKVDYSKSRRKHFGNPHIRLPSSSSSSSSSSSQNTIMVAESTDMQEVVDLSAMSLDILPISPSFNLATIRVLDISNNNLQVIPESLAARLLNMVVLDVHSNQLKTLPNSIGCMSKLKSLNVSGNHLQSLPKTIENCRALEDLNANFNQLTTLPDTIGFELINLKKLSVNSNKLIFLPTSTGHLTNLRHLDVRLNRLRSLPDDLESLTNLEILNVSQNFQYLEILPYSVGLLISLVELDVSYNKITALPESVGCL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G035960
TK1151 IDTkA08G035960
OH-1004 IDLXL04_017973
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G035960
LocationChr08:9172257-9173965 (-)
DescriptionSimilar to PIRL6: Plant intracellular Ras-group-related LRR protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g19330 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
At4g29880 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
At4g26050 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0605300 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017973 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009555 pollen development Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0055046 microgametogenesis Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT2G19330
ath:AT3G11330
ath:AT4G26050
ath:AT4G29880
dosa:Os04g0605300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.399
Rank 1 · TkA08G035960 · TK1151
Nucleus0.323
Rank 2 · TkA08G035960 · TK1151
Cytoplasm0.317
Rank 3 · TkA08G035960 · TK1151
Plastid0.049
Rank 4 · TkA08G035960 · TK1151
Endoplasmic reticulum0.042
Rank 5 · TkA08G035960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30675FAM1339-39 aa
PF23952LRR_EndoS38-83 aa
PF23598LRR_1443-173 aa
PF00560LRR_153-65 aa
PF23211LRR_LRWD154-86 aa
PF13516LRR_673-86 aa
PF13855LRR_875-132 aa
PF12799LRR_475-113 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G035960PF30675FAM1339390.5711.2
TkA08G035960PF23952LRR_EndoS38830.01516.2
TkA08G035960PF23598LRR_14431731.9e-1970.4
TkA08G035960PF00560LRR_153653.5e-1759.5
TkA08G035960PF23211LRR_LRWD154860.0001722.0
TkA08G035960PF13516LRR_673860.002518.4
TkA08G035960PF13855LRR_8751324.6e-2691.1
TkA08G035960PF12799LRR_4751134.2e-2484.7
TkA08G035960PF00560LRR_175933.5e-1759.5
TkA08G035960PF23286LRR_13821210.002418.3
TkA08G035960PF24048LRR_NXF1-5831550.08613.2
TkA08G035960PF23211LRR_LRWD1971770.0001722.0
TkA08G035960PF00560LRR_1991193.5e-1759.5
TkA08G035960PF13516LRR_6991090.002518.4
TkA08G035960PF23286LRR_131161710.002418.3
TkA08G035960PF23952LRR_EndoS1181480.01516.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O64566Arabidopsis thalianasp|O64566|PIRL6_ARATH Plant intracellular Ras-group-related LRR protein 657.100%Swiss-ProtHigh
Q5G5D8Arabidopsis thalianasp|Q5G5D8|PIRL7_ARATH Plant intracellular Ras-group-related LRR protein 758.000%Swiss-ProtHigh
Q8RWE5Arabidopsis thalianasp|Q8RWE5|PIRL8_ARATH Plant intracellular Ras-group-related LRR protein 869.300%Swiss-ProtMedium
Q7XNY1Oryza sativa subsp. japonicasp|Q7XNY1|PIRL1_ORYSJ Plant intracellular Ras-group-related LRR protein 160.200%Swiss-ProtLow

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