TkA08G027260 | RubberDandelionOmics

Gene overview

TkA08G027260

Reference: TK1151 Chr: Chr08 Coordinates: 7054216-7056415 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1230 bp · TkA08G027260|TK1151|cDNA

TTAATCTATTCAGTTTTGTGACATGTGGTTCTTTATTTTATTCTCAATCCATCTCTCTATATAAAGTCGGATCATATCCCTCTTTAGACACCAACACAGCTAAAGATTCCAAAAATTCCTTTTTTGTATCACGTACACAAATAAGCAGAAAGAAATGGGGATAGTGGGTGAATACAAGAGAAGGTATGCATTACTTCTAGCAGCAAGAGACTCAGAGTATGTGAAGAAGGTGTACGGAGGGTATTTTAATGTATTTTTCG...

CDS

Download CDS FASTA

732 bp · TkA08G027260|TK1151|CDS

ATGGGGATAGTGGGTGAATACAAGAGAAGGTATGCATTACTTCTAGCAGCAAGAGACTCAGAGTATGTGAAGAAGGTGTACGGAGGGTATTTTAATGTATTTTTCGCAGCTTTTGGCGAAGAGGAAGAAGAGAGGTGGGATTTGTATAGGGTAGTTGATGGGGAATTTCCTGACATGAATGAGCTTCAAGATTATGATGGGTTTGTAGTGAGTGGAAGTCCGTATGATTCTTATGGAGATGACGATTGGATTCTCGAGCT...

Protein

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243 aa · TkA08G027260|TK1151|PROTEIN

MGIVGEYKRRYALLLAARDSEYVKKVYGGYFNVFFAAFGEEEEERWDLYRVVDGEFPDMNELQDYDGFVVSGSPYDSYGDDDWILELCFLLQTLDSMQKKVLGICFGHQVLCRALGGRVGKSQSGWDIGLRKVKILKDFSPSNFLESLTEMPPPLSIIECHQDEVLEVPMGAEVIAYSDKTGVEMFTIGDHILGIQGHPEYSKDILNNLIDRLLNQDDIDVCNQSHATSILNIFNIYITSTCI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G027260`
TK1151 ID	TkA08G027260
OH-1004 ID	LXL04_018092
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 90.947 / OH-1004 87.698 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G027260

Location Chr08:7054216-7056415 (-)

Description Similar to GGP3: Gamma-glutamyl peptidase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30550`	Involved in glucosinolate biosynthesis.	Cytosolic γ-glutamyl peptidases process glutathione conjugates in the biosynthesis of glucosinolates and camalexin in Arabidopsis.2011 · DOI: 10.1105/tpc.111.083998
`At2g23970`	Involved in glucosinolate biosynthesis.	No verified direct reference in this release
`At4g30540`	Involved in glucosinolate biosynthesis.	No verified direct reference in this release
`At4g30530`	Involved in glucosinolate biosynthesis.	Cytosolic γ-glutamyl peptidases process glutathione conjugates in the biosynthesis of glucosinolates and camalexin in Arabidopsis.2011 · DOI: 10.1105/tpc.111.083998
`At2g23960`	Involved in glucosinolate biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018092 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0010120 camalexin biosynthetic process Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0008233 peptidase activity Molecular Function

GO:0034722 gamma-glutamyl-peptidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G23960

ath:AT2G23970

ath:AT4G30530

ath:AT4G30540

ath:AT4G30550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.683

Rank 1 · TkA08G027260 · TK1151

Nucleus0.482

Rank 2 · TkA08G027260 · TK1151

Mitochondrion0.054

Rank 3 · TkA08G027260 · TK1151

Peroxisome0.049

Rank 4 · TkA08G027260 · TK1151

Cell membrane0.046

Rank 5 · TkA08G027260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00117GATase60-202 aa

PF04204HTS61-212 aa

PF07722Peptidase_C2695-200 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G027260	`PF00117`	GATase	60	202	1.6e-15	58.0
TkA08G027260	`PF04204`	HTS	61	212	4.7e-06	26.6
TkA08G027260	`PF07722`	Peptidase_C26	95	200	1.3e-05	25.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M0A5`	Arabidopsis thaliana	sp\|Q9M0A5\|GGP3_ARATH Gamma-glutamyl peptidase 3	57.300%	Swiss-Prot	High
`O82225`	Arabidopsis thaliana	sp\|O82225\|GGP5_ARATH Gamma-glutamyl peptidase 5	57.900%	Swiss-Prot	High
`Q9M0A6`	Arabidopsis thaliana	sp\|Q9M0A6\|GGP2_ARATH Gamma-glutamyl peptidase 2	54.400%	Swiss-Prot	High
`Q9M0A7`	Arabidopsis thaliana	sp\|Q9M0A7\|GGP1_ARATH Gamma-glutamyl peptidase 1	52.400%	Swiss-Prot	High
`F4INN2`	Arabidopsis thaliana	sp\|F4INN2\|GGP4_ARATH Gamma-glutamyl peptidase 4	51.900%	Swiss-Prot	High

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