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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G020700
Reference: TK1151 Chr: Chr08 Coordinates: 5179307-5182570 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2637 bp · TkA08G020700|TK1151|cDNA

AAAAAAATTAGTTTATCAACTTATATGATACCATATAAACTAACCGAAATAGGTTTCTTAAAAACCCTTTTTGTTACATCCCATAAAAAAATTGAATAGTAAGTTAAATAAATTGGTACAAAAGAGATTTTGTGGTCGTTGGTGAGTTATCCTAAAATCGAAAGAAAAAGGACAAGAAAATCACAAGTGAGTTATCCTAAAATCGAAAGAAAAAGGACAAGAAAATCACAAGGGCATCATCTTGTCATCTTGAACTTCTT...

CDS

Download CDS FASTA

2031 bp · TkA08G020700|TK1151|CDS

ATGATGAGCATTAAAGACTGGGTTGTATCACAGTTGGTCTCAAACTCATTGGCCTCAACAAGACCATTGTCAGGCAGTGATAGCTTCTTTGAAGAACGCCCTCCTAACGACTTCACCATTCATGGTTCCAGTCAAACCACCACCTCGCCACCACCAGAGGCGGCAACAGATGTCTCACAACCACCCATTCGCAGCCAAGAACCGCCACACCCTTCCCCTCTCCTGCCACCCACTTTTGAGAGCTCTCATCAACCTCAAAC...

Protein

Download Protein FASTA

677 aa · TkA08G020700|TK1151|PROTEIN

MMSIKDWVVSQLVSNSLASTRPLSGSDSFFEERPPNDFTIHGSSQTTTSPPPEAATDVSQPPIRSQEPPHPSPLLPPTFESSHQPQTPQKNLNPLEKIENLQIKFFRLLHHLGHSTNNLIVAKVLYRIHLATLIRTQESDLKKVNLNSDRAKAIAVQQETSGQTELDFSFSILVLGKTGVGKSSTINSILNELKAHTNAFRPATERVQEVSGIVNGIKISFIDTPGLLPSSPNTIGRNRKILYKIKKRCRKYPPDMVLYF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G020700
TK1151 IDTkA08G020700
OH-1004 IDLXL04_018199
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 84.099
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G020700
LocationChr08:5179307-5182570 (+)
DescriptionSimilar to TOC90: Translocase of chloroplast 90, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g20300 GTPase involved in protein precursor import into chloroplasts.
AtToc90, a new GTP-binding component of the Arabidopsis chloroplast protein import machinery.2004 · DOI: 10.1023/b:plan.0000036374.92546.51

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018199 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0045036 protein targeting to chloroplast Biological Process
GO:0045037 protein import into chloroplast stroma Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009707 chloroplast outer membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT5G20300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.270
Rank 1 · TkA08G020700 · TK1151
Nucleus0.182
Rank 2 · TkA08G020700 · TK1151
Plastid0.178
Rank 3 · TkA08G020700 · TK1151
Cell membrane0.157
Rank 4 · TkA08G020700 · TK1151
Mitochondrion0.152
Rank 5 · TkA08G020700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11886TOC159_MAD143-166 aa
PF05673DUF815156-196 aa
PF00735Septin168-226 aa
PF00437T2SSE168-197 aa
PF12775AAA_7170-197 aa
PF04548AIG1171-320 aa
PF03193RsgA_GTPase171-227 aa
PF01935DUF87171-195 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G020700PF11886TOC159_MAD1431661.1e-69235.1
TkA08G020700PF05673DUF8151561960.0812.8
TkA08G020700PF00735Septin1682260.007316.3
TkA08G020700PF00437T2SSE1681970.0812.3
TkA08G020700PF12775AAA_71701970.01315.7
TkA08G020700PF04548AIG11713201.1e-1971.3
TkA08G020700PF03193RsgA_GTPase1712271e-0526.2
TkA08G020700PF01935DUF871711950.002218.8
TkA08G020700PF13191AAA_161712000.02515.8
TkA08G020700PF02421FeoB_N1712280.1612.2
TkA08G020700PF01926MMR_HSR11722371.4e-1042.0
TkA08G020700PF13401AAA_221722050.06814.2
TkA08G020700PF00004AAA1722670.08214.1
TkA08G020700PF00350Dynamin_N1722070.2312.2
TkA08G020700PF00350Dynamin_N2182280.2312.2
TkA08G020700PF01935DUF874554700.002218.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6S5G3Arabidopsis thalianasp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic50.400%Swiss-ProtHigh

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