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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G004900
Reference: TK1151 Chr: Chr08 Coordinates: 1261623-1263785 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2058 bp · TkA08G004900|TK1151|cDNA

ATGAAGAAGATTTCGATACTTTTTTGTGTAGTTCTGTTTTCATTTTTGTCTGGTTGTGTGTTTTGTTTTTCCGATGATGGTGGTGGCTTGAGTTCTGGAAAGCTCACCGACGGTGAGGTGAGTTATATTCGTCAACGGCAACTGCTGTACTACCGGGATGAGTTCGGTGACAGAGGCGAGAATGTGAGCGTGGATCCGACGCTCGTGTTTGAAAACCCTCGGCTGAGGAATGCTTACATTGCTTTACAAGCTTGGAAGCA...

CDS

Download CDS FASTA

2058 bp · TkA08G004900|TK1151|CDS

ATGAAGAAGATTTCGATACTTTTTTGTGTAGTTCTGTTTTCATTTTTGTCTGGTTGTGTGTTTTGTTTTTCCGATGATGGTGGTGGCTTGAGTTCTGGAAAGCTCACCGACGGTGAGGTGAGTTATATTCGTCAACGGCAACTGCTGTACTACCGGGATGAGTTCGGTGACAGAGGCGAGAATGTGAGCGTGGATCCGACGCTCGTGTTTGAAAACCCTCGGCTGAGGAATGCTTACATTGCTTTACAAGCTTGGAAGCA...

Protein

Download Protein FASTA

685 aa · TkA08G004900|TK1151|PROTEIN

MKKISILFCVVLFSFLSGCVFCFSDDGGGLSSGKLTDGEVSYIRQRQLLYYRDEFGDRGENVSVDPTLVFENPRLRNAYIALQAWKQAILSDPQNLTANWVGSGVCDYTGVFCAPALDNSSERTVAGIDLNHGDIAGYLPEELGLLKDLALFHINSNRFCGTVPQKFRHLKLLYELDLSNNRFAGKFPYVVLKLPVLKFLDIRFNEFEGSVPKELFDKDLDAIFINHNRFLFELPDNFGNSPVSVIVLANNRFHGCLPAS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G004900
TK1151 IDTkA08G004900
OH-1004 IDLXL04_018323
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 65.839 / OH-1004 60.456
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G004900
LocationChr08:1261623-1263785 (+)
DescriptionSimilar to LRX4: Leucine-rich repeat extensin-like protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g24480 Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. No verified direct reference in this release
At4g18670 Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. No verified direct reference in this release
At4g13340 Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. No verified direct reference in this release
At5g25550 Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. No verified direct reference in this release
At1g62440 Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.
Synergistic interaction of the two paralogous Arabidopsis genes LRX1 and LRX2 in cell wall formation during root hair development.2003 · DOI: 10.1046/j.1365-313x.2003.01784.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018323 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009860 pollen tube growth Biological Process
GO:0071555 cell wall organization Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0099503 secretory vesicle Cellular Component
GO:0005199 structural constituent of cell wall Molecular Function
GO:0042277 peptide binding Molecular Function
KEGG gene cross-reference
ath:AT1G49490
ath:AT3G24480
ath:AT4G13340
ath:AT4G18670
ath:AT5G25550
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.478
Rank 1 · TkA08G004900 · TK1151
Endoplasmic reticulum0.149
Rank 2 · TkA08G004900 · TK1151
Cell membrane0.138
Rank 3 · TkA08G004900 · TK1151
Cytoplasm0.094
Rank 4 · TkA08G004900 · TK1151
Plastid0.051
Rank 5 · TkA08G004900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_281-113 aa
PF00560LRR_1128-144 aa
PF13855LRR_8150-206 aa
PF00560LRR_1152-170 aa
PF00560LRR_1173-189 aa
PF12799LRR_4175-205 aa
PF00560LRR_1197-215 aa
PF13855LRR_8221-264 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G004900PF08263LRRNT_2811130.0001722.5
TkA08G004900PF00560LRR_11281441.1e-1349.1
TkA08G004900PF13855LRR_81502067.4e-1039.2
TkA08G004900PF00560LRR_11521701.1e-1349.1
TkA08G004900PF00560LRR_11731891.1e-1349.1
TkA08G004900PF12799LRR_41752050.0002821.7
TkA08G004900PF00560LRR_11972151.1e-1349.1
TkA08G004900PF13855LRR_82212647.4e-1039.2
TkA08G004900PF00560LRR_12232401.1e-1349.1
TkA08G004900PF13855LRR_82443027.4e-1039.2
TkA08G004900PF00560LRR_12452641.1e-1349.1
TkA08G004900PF12799LRR_42472780.0002821.7
TkA08G004900PF00560LRR_12682871.1e-1349.1
TkA08G004900PF13855LRR_82683247.4e-1039.2
TkA08G004900PF00560LRR_12933131.1e-1349.1
TkA08G004900PF13855LRR_82933437.4e-1039.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LHF1Arabidopsis thalianasp|Q9LHF1|LRX4_ARATH Leucine-rich repeat extensin-like protein 467.100%Swiss-ProtMedium
Q9SN46Arabidopsis thalianasp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 573.100%Swiss-ProtMedium
Q9T0K5Arabidopsis thalianasp|Q9T0K5|LRX3_ARATH Leucine-rich repeat extensin-like protein 366.900%Swiss-ProtMedium
Q4PSE6Arabidopsis thalianasp|Q4PSE6|LRX7_ARATH Leucine-rich repeat extensin-like protein 763.100%Swiss-ProtMedium
O48809Arabidopsis thalianasp|O48809|LRX2_ARATH Leucine-rich repeat extensin-like protein 260.100%Swiss-ProtMedium

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