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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G004740
Reference: TK1151 Chr: Chr08 Coordinates: 1221168-1224772 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2032 bp · TkA08G004740|TK1151|cDNA

AGAAACTCCAAAACAATCCCATAACGAGCGAATTTTGAATGGGATGACACCAAAATGTGAGGCTCACAAATATCGCCACAATCCTTCAATCCTCTTTCTCTCTCAGGCCACGCGTGAAAGGAGCAGGCATGAGGCTTCTTCAAGCTCCAGCGTCTGTGTATGTGACTTCACAATGCTCAAAGCCTCAATCCAGAGGTGGAAGTATTCTGGAGAGGCGTATTTTGCAGTCCGCCATTAATGATTCTCTTCTCTCTCGAAGA...

CDS

Download CDS FASTA

1593 bp · TkA08G004740|TK1151|CDS

ATGAGGCTTCTTCAAGCTCCAGCGTCTGTGTATGTGACTTCACAATGCTCAAAGCCTCAATCCAGAGGTGGAAGTATTCTGGAGAGGCGTATTTTGCAGTCCGCCATTAATGATTCTCTTCTCTCTCGAAGAATAGTACGACAACAAATTTCGTTAACACGCAGGACTGTGAAACCTGTTTCTGCTACAGCTTCTTCTCTGGAAGCTGATGCTTCAACATTATTAACCGTGGAAGCTGAAAACGATGTGTTAAAAGCCTT...

Protein

Download Protein FASTA

530 aa · TkA08G004740|TK1151|PROTEIN

MRLLQAPASVYVTSQCSKPQSRGGSILERRILQSAINDSLLSRRIVRQQISLTRRTVKPVSATASSLEADASTLLTVEAENDVLKALSQIIDPDFGTDIVSCGFIKDLQVDDISGEVSFRLELTTPACPIKDLFEKQANEVVAALPWVKNVTVTMSAQPPNQIFSAQLPAGLQTISNIIAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKKTIIPTEYMGVKMVSFGFAGQGR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G004740
TK1151 IDTkA08G004740
OH-1004 IDLXL04_018325
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 95.660 / OH-1004 89.894
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G004740
LocationChr08:1221168-1224772 (+)
DescriptionSimilar to HCF101: Fe-S cluster assembly factor HCF101, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g24430 Required for photosystem I (PSI) biosynthesis and assembly.
A novel protein for photosystem I biogenesis.2004 · DOI: 10.1074/jbc.m309246200
The universally conserved HCF101 protein is involved in assembly of [4Fe-4S]-cluster-containing complexes in Arabidopsis thaliana chloroplasts.2004 · DOI: 10.1046/j.1365-313x.2003.01952.x

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0719700 Required for photosystem I (PSI) biosynthesis and assembly. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018325 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016226 iron-sulfur cluster assembly Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0046872 metal ion binding Molecular Function
GO:0051536 iron-sulfur cluster binding Molecular Function
GO:0051539 4 iron, 4 sulfur cluster binding Molecular Function
GO:0140663 ATP-dependent FeS chaperone activity Molecular Function
KEGG gene cross-reference
ath:AT3G24430
dosa:Os01g0719700
heo:C694_01035
hpj:jhp_0193
hpy:HP_0207
syn:slr0067
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.946
Rank 1 · TkA08G004740 · TK1151
Mitochondrion0.095
Rank 2 · TkA08G004740 · TK1151
Cytoplasm0.045
Rank 3 · TkA08G004740 · TK1151
Nucleus0.027
Rank 4 · TkA08G004740 · TK1151
Peroxisome0.022
Rank 5 · TkA08G004740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01883FeS_assembly_P81-153 aa
PF02374ArsA_ATPase124-144 aa
PF10609ParA175-411 aa
PF13614AAA_31177-296 aa
PF07015VirC1177-215 aa
PF06564CBP_BcsQ177-213 aa
PF09140MipZ178-324 aa
PF01656CbiA179-324 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G004740PF01883FeS_assembly_P811537.8e-2071.7
TkA08G004740PF02374ArsA_ATPase1241440.006416.5
TkA08G004740PF10609ParA1754112.7e-82276.6
TkA08G004740PF13614AAA_311772962.7e-1041.1
TkA08G004740PF07015VirC11772150.000520.2
TkA08G004740PF06564CBP_BcsQ1772130.02215.0
TkA08G004740PF09140MipZ1783244.9e-0730.1
TkA08G004740PF01656CbiA1793245.9e-1039.9
TkA08G004740PF02374ArsA_ATPase1832100.006416.5
TkA08G004740PF00142Fer4_NifH1842910.00218.4
TkA08G004740PF13481AAA_251852050.3111.3
TkA08G004740PF16575CLP1_P1872180.2311.9
TkA08G004740PF06564CBP_BcsQ2753060.02215.0
TkA08G004740PF02374ArsA_ATPase3093460.006416.5
TkA08G004740PF13481AAA_254324700.3111.3
TkA08G004740PF06155GBBH-like_N4465083.7e-0834.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6STH5Arabidopsis thalianasp|Q6STH5|HF101_ARATH Fe-S cluster assembly factor HCF101, chloroplastic81.400%Swiss-ProtHigh
Q0JJS8Oryza sativa subsp. japonicasp|Q0JJS8|HF101_ORYSJ Fe-S cluster assembly factor HCF101, chloroplastic85.700%Swiss-ProtHigh

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