RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G432190
Reference: TK1151 Chr: Chr07 Coordinates: 109357537-109366051 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4049 bp · TkA07G432190|TK1151|cDNA

TTTGCTCATCTCTCTCTCTTGTTCCTTCGTCTCATTCGGTTTCTCTCTCTATCTCTCTCTCCCTCTCTAGAGTCTCTTTCTCTCTGTTTCTCTCTCTCTCTCTCCCGGAGAGGACGAAGACGACGAAGAACACAACAAAAGAAGCACAAAGATATGGTGTCAACGCGTCGCAGCGGATCTATATCAAACAACAACAGCAACAACAGCAACAACAACAAACGATCATCGTCTTCTGAACAGAAACCCCCGTCCCCCAAACG...

CDS

Download CDS FASTA

3681 bp · TkA07G432190|TK1151|CDS

TTTGCTCATCTCTCTCTCTTGTTCCTTCGTCTCATTCGGTTTCTCTCTCTATCTCTCTCTCCCTCTCTAGAGTCTCTTTCTCTCTGTTTCTCTCTCTCTCTCTCCCGGAGAGGACGAAGACGACGAAGAACACAACAAAAGAAGCACAAAGATATGGTGTCAACGCGTCGCAGCGGATCTATATCAAACAACAACAGCAACAACAGCAACAACAACAAACGATCATCGTCTTCTGAACAGAAACCCCCGTCCCCCAAACG...

Protein

Download Protein FASTA

1226 aa · TkA07G432190|TK1151|PROTEIN

FAHLSLLFLRLIRFLSLSLSPSLESLSLCFSLSLSRRGRRRRRTQQKKHKDMVSTRRSGSISNNNSNNSNNNKRSSSSEQKPPSPKRQKADNGGASEKSTPQEPSQQPLVDNSKEFNSPAVLDPPENAEASYHRKDGSGEGDAVSAGKAEAAPAASIVTPIAQVPILGEKLKSSFSSWKQQNQSSEIVTPWCKLLAQTSLNQTMSVYTTNFLVGSNKNANLSIKEISAILCTIKPNELEGGSPAVLESKGSKGSVLVNGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G432190
TK1151 IDTkA07G432190
OH-1004 IDLXL04_037056
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)58.200
Protein coverage (%)TK1151 85.481 / OH-1004 89.841
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G432190
LocationChr07:109357537-109366051 (+)
DescriptionSimilar to atad1a: ATPase family AAA domain-containing protein 1-A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037056 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002092 positive regulation of receptor internalization Biological Process
GO:0009653 anatomical structure morphogenesis Biological Process
GO:0140570 extraction of mislocalized protein from mitochondrial outer membrane Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005741 mitochondrial outer membrane Cellular Component
GO:0005778 peroxisomal membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0140567 membrane protein dislocase activity Molecular Function
KEGG gene cross-reference
bta:506045
hsa:84896
mmu:67979
rno:309532
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.511
Rank 1 · TkA07G432190 · TK1151
Cytoplasm0.307
Rank 2 · TkA07G432190 · TK1151
Cell membrane0.110
Rank 3 · TkA07G432190 · TK1151
Endoplasmic reticulum0.082
Rank 4 · TkA07G432190 · TK1151
Plastid0.066
Rank 5 · TkA07G432190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22833C5orf34_2nd16-89 aa
PF22251PFF1_TM25-115 aa
PF00498FHA231-279 aa
PF24933DUF7751441-466 aa
PF13481AAA_25462-515 aa
PF00004AAA491-513 aa
PF18129SH3_12576-650 aa
PF00004AAA666-722 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G432190PF22833C5orf34_2nd16890.1313.6
TkA07G432190PF22251PFF1_TM251150.7110.1
TkA07G432190PF00498FHA2312790.01916.1
TkA07G432190PF24933DUF77514414662.3e-2073.5
TkA07G432190PF13481AAA_254625150.0116.2
TkA07G432190PF00004AAA4915134e-39134.8
TkA07G432190PF18129SH3_125766500.002418.5
TkA07G432190PF00004AAA6667224e-39134.8
TkA07G432190PF05673DUF8156677170.03114.2
TkA07G432190PF13479AAA_247037290.04414.2
TkA07G432190PF24933DUF77518248832.3e-2073.5
TkA07G432190PF13173AAA_149039410.0008420.1
TkA07G432190PF02367TsaE9559860.2611.9
TkA07G432190PF12775AAA_79569970.02914.6
TkA07G432190PF05673DUF8159579880.03114.2
TkA07G432190PF05496RuvB_N95910317.3e-0523.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser