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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G406710
Reference: TK1151 Chr: Chr07 Coordinates: 102245116-102246842 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1030 bp · TkA07G406710|TK1151|cDNA

GCTGATTTCACCGAAACACAGAGTAAGCAAGGCTTAACCCTCCGCACAGTCGAATCCTGATCAATCTCTCGATCATCGTCGCCATGGGAACCCTGGGAAGAGCCGCATACACATTCGGATTCTGGATCCGCGAAACTGGACAAGCCATGGATCGTCTCGGTTCACGCCTCCAGGGCAACAACTACTTCAAAGAACAACTTTCCAGACATCGAACTCTTATGAATGTGTACAACAAAGCCCCTACAGTTGCTAAAGATGCA...

CDS

Download CDS FASTA

732 bp · TkA07G406710|TK1151|CDS

ATGGGAACCCTGGGAAGAGCCGCATACACATTCGGATTCTGGATCCGCGAAACTGGACAAGCCATGGATCGTCTCGGTTCACGCCTCCAGGGCAACAACTACTTCAAAGAACAACTTTCCAGACATCGAACTCTTATGAATGTGTACAACAAAGCCCCTACAGTTGCTAAAGATGCATTTGTGGCCCCAAGTGCTTCTATCATCGGGGATGTTCAAGTGGGAGCAGGTTCATCTATTTGGTACGGATGTGTTCTCAGAGG...

Protein

Download Protein FASTA

243 aa · TkA07G406710|TK1151|PROTEIN

MGTLGRAAYTFGFWIRETGQAMDRLGSRLQGNNYFKEQLSRHRTLMNVYNKAPTVAKDAFVAPSASIIGDVQVGAGSSIWYGCVLRGDVNSISIGSGTNIQDHSLVHVAKSNLPGKVHPIVIGDNVTIGHSAVLHGCTVENEAFVGMKATLLDGVVVEKHAMVAAGALVRQGTRIPTGEVWGGNPAKFLRKLKDEEIAFISKSATNYASLAKDHADENGKALDKDEFLKVFQKKANVDPSLIQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G406710
TK1151 IDTkA07G406710
OH-1004 IDLXL04_030482
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G406710
LocationChr07:102245116-102246842 (+)
DescriptionSimilar to GAMMACA1: Gamma carbonic anhydrase 1, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g19580 Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. No verified direct reference in this release
At1g47260 May participate in carbonic acid breakdown but does not mediate reversible hydration of carbon dioxide.
Disruption of a nuclear gene encoding a mitochondrial gamma carbonic anhydrase reduces complex I and supercomplex I + III2 levels and alters mitochondrial physiology in Arabidopsis.2005 · DOI: 10.1016/j.jmb.2005.04.062
Recombinant plant gamma carbonic anhydrase homotrimers bind inorganic carbon.2009 · DOI: 10.1016/j.febslet.2009.09.055
At5g66510 Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030482 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009853 photorespiration Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0070207 protein homotrimerization Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009536 plastid Cellular Component
GO:0031966 mitochondrial membrane Cellular Component
KEGG gene cross-reference
ath:AT1G19580
ath:AT1G47260
ath:AT5G63510
ath:AT5G66510
ddi:DDB_G0288155
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.890
Rank 1 · TkA07G406710 · TK1151
Cytoplasm0.117
Rank 2 · TkA07G406710 · TK1151
Nucleus0.064
Rank 3 · TkA07G406710 · TK1151
Cell membrane0.038
Rank 4 · TkA07G406710 · TK1151
Peroxisome0.026
Rank 5 · TkA07G406710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07959Fucose_pyrophosphorylase29-102 aa
PF00132Hexapep54-87 aa
PF25087GMPPB_C55-107 aa
PF25084LbH_EIF2B65-87 aa
PF14602Hexapep_274-79 aa
PF21711DCTN578-193 aa
PF25084LbH_EIF2B91-176 aa
PF00132Hexapep92-106 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G406710PF07959Fucose_pyrophosphorylase291020.005416.4
TkA07G406710PF00132Hexapep54871.2e-1660.3
TkA07G406710PF25087GMPPB_C551076.4e-0626.6
TkA07G406710PF25084LbH_EIF2B65876.8e-0833.2
TkA07G406710PF14602Hexapep_274790.0001322.3
TkA07G406710PF21711DCTN5781930.0004120.8
TkA07G406710PF25084LbH_EIF2B911766.8e-0833.2
TkA07G406710PF00132Hexapep921061.2e-1660.3
TkA07G406710PF24894Hexapep_GlmU931450.002118.9
TkA07G406710PF00132Hexapep1181361.2e-1660.3
TkA07G406710PF14602Hexapep_21191470.0001322.3
TkA07G406710PF25087GMPPB_C1211646.4e-0626.6
TkA07G406710PF07959Fucose_pyrophosphorylase1211630.005416.4
TkA07G406710PF18836B_solenoid_ydck1221360.6310.9
TkA07G406710PF24894Hexapep_GlmU1261860.002118.9
TkA07G406710PF00132Hexapep1361701.2e-1660.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FWR5Arabidopsis thalianasp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial80.300%Swiss-ProtHigh
Q9C6B3Arabidopsis thalianasp|Q9C6B3|GCA2_ARATH Gamma carbonic anhydrase 2, mitochondrial72.600%Swiss-ProtHigh
Q94AU7Arabidopsis thalianasp|Q94AU7|GCA3_ARATH Gamma carbonic anhydrase 3, mitochondrial64.100%Swiss-ProtHigh

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