TkA07G398960 | RubberDandelionOmics

Gene overview

TkA07G398960

Reference: TK1151 Chr: Chr07 Coordinates: 100239212-100240141 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

719 bp · TkA07G398960|TK1151|cDNA

CTATTCTATCCATTTTTTAAACGGCTATTTTTGATAATGACGATTTTTTTAGCTATTTTAAATGAAGTCATTAACCAAAAATCTTAATAATTTGCAATTTTGATGTGGTTGGGTGTTAGACAAGGCGGCGGTGAACTTTTGTTGTCAAGCCTACATGTCTCAATACCGGATAGAAAGAACACTTACCGATGCCAATAGCAGAAACAATTAAAATATGATGGGTGTTATGATTCCACAATCTGTTGTCTTGGGGTCATCTT...

CDS

Download CDS FASTA

372 bp · TkA07G398960|TK1151|CDS

ATGGCATCGTCCGATCTCAAATCCGCTGCCTTGATGGACCAGATGAACTCCCACTTCTCCACCGATGCCGGCAAAGCCCTCACCAAAAAGATCGGACTTGTTTACCAAATTCACATCGCCCCCAAGAAAATGGGATTTCAAGAGGAGATTTACGTCGTTGATTTGAAGAAAGGAGAGGTTACTAAAGGCCCATATGATGGGGGAAAACCGGATGCAACGTTTTCTTTCACAGATGCCGATTTCTTCAAGATTGCTACTGG...

Protein

Download Protein FASTA

123 aa · TkA07G398960|TK1151|PROTEIN

MASSDLKSAALMDQMNSHFSTDAGKALTKKIGLVYQIHIAPKKMGFQEEIYVVDLKKGEVTKGPYDGGKPDATFSFTDADFFKIATGKMNPQIAFMRGKMKVKGSLSAAQKFTPDIFPKPSKM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G398960`
TK1151 ID	TkA07G398960
OH-1004 ID	LXL04_030346
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G398960

Location Chr07:100239212-100240141 (-)

Description Similar to SCP2: Sterol carrier protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42890`	Enhances the transfer of lipids between membranes in vitro.	Arabidopsis sterol carrier protein-2 is required for normal development of seeds and seedlings.2008 · DOI: 10.1093/jxb/ern201

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030346 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000038 very long-chain fatty acid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006635 fatty acid beta-oxidation Biological Process

GO:0006694 steroid biosynthetic process Biological Process

GO:0006701 progesterone biosynthetic process Biological Process

GO:0006869 lipid transport Biological Process

GO:0008206 bile acid metabolic process Biological Process

GO:0008209 androgen metabolic process Biological Process

GO:0008210 estrogen metabolic process Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009744 response to sucrose Biological Process

KEGG gene cross-reference

ath:AT5G42890

bta:508918

gga:396550

hsa:6342

rno:79244

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.663

Rank 1 · TkA07G398960 · TK1151

Peroxisome0.189

Rank 2 · TkA07G398960 · TK1151

Nucleus0.161

Rank 3 · TkA07G398960 · TK1151

Endoplasmic reticulum0.115

Rank 4 · TkA07G398960 · TK1151

Mitochondrion0.110

Rank 5 · TkA07G398960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02036SCP215-113 aa

PF14864Alkyl_sulf_C48-113 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G398960	`PF02036`	SCP2	15	113	2.4e-19	70.3
TkA07G398960	`PF14864`	Alkyl_sulf_C	48	113	0.00013	22.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FMN0`	Arabidopsis thaliana	sp\|Q9FMN0\|SCP2_ARATH Sterol carrier protein 2	75.600%	Swiss-Prot	High

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