LXL04_030346 | RubberDandelionOmics

Gene overview

LXL04_030346

Reference: OH-1004 Chr: Chr06 Coordinates: 114722961-114723544 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

372 bp · LXL04_030346|LXL04_030346|OH1004|cDNA

ATGGCATCGTCCGATCTCAAATCCGCTGCCTTGATGGACCAGATGAACTCCCACTTCTCCACCGATGCCGGCAAAGCCCTCACCAAAAAGATCGGACTTGTTTACCAAATTCACATCGCCCCCAAGAAAATGGGATTTCAAGAGGAGATTTACGTCGTTGATTTGAAGAAAGGAGAGGTTACTAAAGGCCCATATGATGGGGGAAAACCGGATGCAACGTTTTCTTTCACAGATGCCGATTTCTTCAAGATTGCTACTGG...

CDS

Download CDS FASTA

372 bp · LXL04_030346|LXL04_030346|OH1004|CDS

ATGGCATCGTCCGATCTCAAATCCGCTGCCTTGATGGACCAGATGAACTCCCACTTCTCCACCGATGCCGGCAAAGCCCTCACCAAAAAGATCGGACTTGTTTACCAAATTCACATCGCCCCCAAGAAAATGGGATTTCAAGAGGAGATTTACGTCGTTGATTTGAAGAAAGGAGAGGTTACTAAAGGCCCATATGATGGGGGAAAACCGGATGCAACGTTTTCTTTCACAGATGCCGATTTCTTCAAGATTGCTACTGG...

Protein

Download Protein FASTA

123 aa · LXL04_030346|LXL04_030346|OH1004|PROTEIN

MASSDLKSAALMDQMNSHFSTDAGKALTKKIGLVYQIHIAPKKMGFQEEIYVVDLKKGEVTKGPYDGGKPDATFSFTDADFFKIATGKMNPQIAFMRGKMKVKGSLSAAQKFTPDIFPKPSKM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030346`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030346

Location Chr06:114722961-114723544 (-)

Description Similar to SCP2: Sterol carrier protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42890`	Enhances the transfer of lipids between membranes in vitro.	Arabidopsis sterol carrier protein-2 is required for normal development of seeds and seedlings.2008 · DOI: 10.1093/jxb/ern201

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030346 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000038 very long-chain fatty acid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006635 fatty acid beta-oxidation Biological Process

GO:0006694 steroid biosynthetic process Biological Process

GO:0006701 progesterone biosynthetic process Biological Process

GO:0006869 lipid transport Biological Process

GO:0008206 bile acid metabolic process Biological Process

GO:0008209 androgen metabolic process Biological Process

GO:0008210 estrogen metabolic process Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009744 response to sucrose Biological Process

KEGG gene cross-reference

ath:AT5G42890

bta:508918

gga:396550

hsa:6342

rno:79244

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.663

Rank 1 · LXL04_030346 · OH-1004

Peroxisome0.189

Rank 2 · LXL04_030346 · OH-1004

Nucleus0.161

Rank 3 · LXL04_030346 · OH-1004

Endoplasmic reticulum0.115

Rank 4 · LXL04_030346 · OH-1004

Mitochondrion0.110

Rank 5 · LXL04_030346 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02036.23SCP215-113 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030346	`PF02036.23`	SCP2	15	113	2.4e-19	70.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FMN0`	Arabidopsis thaliana	Sterol carrier protein 2	75.610%	Swiss-Prot	strong database homology

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